Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23878 | 5' | -57.7 | NC_005262.1 | + | 21582 | 0.67 | 0.569918 |
Target: 5'- gGGCGGCuacggcuacAGCAagaaGCUCGcggcgaacCCUGACUGc -3' miRNA: 3'- gCUGCCG---------UCGUg---CGAGCu-------GGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 23453 | 0.69 | 0.467802 |
Target: 5'- aCGACuGGC-GCAUGCgCGGCCUGgacgaaugGCUGg -3' miRNA: 3'- -GCUG-CCGuCGUGCGaGCUGGAC--------UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 24205 | 0.66 | 0.655258 |
Target: 5'- aGGCGGCAGCcgcgacgcuGCGC-CGGCaCgccGAUUGg -3' miRNA: 3'- gCUGCCGUCG---------UGCGaGCUG-Ga--CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 27311 | 0.66 | 0.638145 |
Target: 5'- aGAuCGGCAGCAucauccacgaccaccUGCUCGACCUc---- -3' miRNA: 3'- gCU-GCCGUCGU---------------GCGAGCUGGAcugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 29608 | 0.7 | 0.411213 |
Target: 5'- gGGCGGCAGCucggaaugcaGCGuCUCGACCUucgugccggcGACg- -3' miRNA: 3'- gCUGCCGUCG----------UGC-GAGCUGGA----------CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30384 | 0.68 | 0.497559 |
Target: 5'- aCGACGGCGGgaACGUggcgccugCGACCUuGAgCUGg -3' miRNA: 3'- -GCUGCCGUCg-UGCGa-------GCUGGA-CU-GAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30572 | 0.67 | 0.538486 |
Target: 5'- aCGACGGCAGCAaGgaCGGCaaGACc- -3' miRNA: 3'- -GCUGCCGUCGUgCgaGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30768 | 0.66 | 0.601781 |
Target: 5'- gGGCGGUacgucagcaucaGGCGCaGCUUGGCgUUGGCUGc -3' miRNA: 3'- gCUGCCG------------UCGUG-CGAGCUG-GACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 31073 | 0.69 | 0.458087 |
Target: 5'- uCGGcCGGCAGCACGC-CGAgCUcGAUg- -3' miRNA: 3'- -GCU-GCCGUCGUGCGaGCUgGA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 31121 | 0.67 | 0.569918 |
Target: 5'- gCGGcCGGCAGCGCGaaCUCGAagcguucgcagaCCUGAUc- -3' miRNA: 3'- -GCU-GCCGUCGUGC--GAGCU------------GGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 32786 | 0.66 | 0.612462 |
Target: 5'- uCGAcacCGGCGGCGCGC-CGGCCa----- -3' miRNA: 3'- -GCU---GCCGUCGUGCGaGCUGGacugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 33183 | 0.69 | 0.448481 |
Target: 5'- uCGGCGGCGGCucgaucuucGCGCccuucagCGGCUUGGCg- -3' miRNA: 3'- -GCUGCCGUCG---------UGCGa------GCUGGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 34046 | 0.66 | 0.612462 |
Target: 5'- uCGAuCGGCAGU-UGCUCGAcgaccagaacCCgGACUGg -3' miRNA: 3'- -GCU-GCCGUCGuGCGAGCU----------GGaCUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 34949 | 0.66 | 0.623159 |
Target: 5'- uCGGCGGCAaguucgacGCgGCGCUCGGCCg----- -3' miRNA: 3'- -GCUGCCGU--------CG-UGCGAGCUGGacugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 35231 | 0.7 | 0.4022 |
Target: 5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3' miRNA: 3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 40746 | 0.7 | 0.384555 |
Target: 5'- gGGCGGCGGCGCGUUccaaaucaaCGGCUauGCUGg -3' miRNA: 3'- gCUGCCGUCGUGCGA---------GCUGGacUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 41262 | 0.67 | 0.538486 |
Target: 5'- uGACGGCGGCgaucACGCagauUCGGCCgcgcgugGGCg- -3' miRNA: 3'- gCUGCCGUCG----UGCG----AGCUGGa------CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 41653 | 0.66 | 0.644566 |
Target: 5'- gCGAUgcgGGCAGC-CGCggCGGCCaGACg- -3' miRNA: 3'- -GCUG---CCGUCGuGCGa-GCUGGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 42247 | 0.67 | 0.559383 |
Target: 5'- aGGCGGCGGCAUcuGCUUcagGACCgcgaGCUGc -3' miRNA: 3'- gCUGCCGUCGUG--CGAG---CUGGac--UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43076 | 0.68 | 0.487543 |
Target: 5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3' miRNA: 3'- gcUGCCGUCGugcg---AGCUGGACUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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