Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23878 | 5' | -57.7 | NC_005262.1 | + | 63288 | 0.7 | 0.384555 |
Target: 5'- uGACGGCcggcuGCugGCUCGGCgUcGACg- -3' miRNA: 3'- gCUGCCGu----CGugCGAGCUGgA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 59401 | 0.71 | 0.326961 |
Target: 5'- aGGCGcGCGacaucgcacgcGCaACGCUCGACCUGaaGCUGg -3' miRNA: 3'- gCUGC-CGU-----------CG-UGCGAGCUGGAC--UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 58563 | 0.66 | 0.601781 |
Target: 5'- aGGCGGCgagaagcugaucGGCACGC-CGGCauggaaugGGCUGa -3' miRNA: 3'- gCUGCCG------------UCGUGCGaGCUGga------CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 57756 | 0.66 | 0.655258 |
Target: 5'- uCGAgGGCAuuGCGCGCaauggCGugCUGGUUGg -3' miRNA: 3'- -GCUgCCGU--CGUGCGa----GCugGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 57412 | 1.09 | 0.000716 |
Target: 5'- aCGACGGCAGCACGCUCGACCUGACUGa -3' miRNA: 3'- -GCUGCCGUCGUGCGAGCUGGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 55337 | 0.67 | 0.559383 |
Target: 5'- uCGACGaGUggaaAGcCGCGCUCGACgaGACg- -3' miRNA: 3'- -GCUGC-CG----UC-GUGCGAGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 54843 | 0.7 | 0.393313 |
Target: 5'- cCGACacGCAGCGCGC-CGACC-GGCUc -3' miRNA: 3'- -GCUGc-CGUCGUGCGaGCUGGaCUGAc -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 53812 | 0.71 | 0.359067 |
Target: 5'- uCGACaGCGGCACGggcaUCGAgCUGACg- -3' miRNA: 3'- -GCUGcCGUCGUGCg---AGCUgGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 52957 | 0.67 | 0.538486 |
Target: 5'- uCGcCGGCGGCAaggUGCUCGAgCCgGGCa- -3' miRNA: 3'- -GCuGCCGUCGU---GCGAGCU-GGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 51224 | 0.72 | 0.311725 |
Target: 5'- cCGGCGGCAGCAgcaGCUCGACgaG-Cg- -3' miRNA: 3'- -GCUGCCGUCGUg--CGAGCUGgaCuGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 50939 | 0.67 | 0.569918 |
Target: 5'- -cACGGCAGCGCgaaGCUCGGCaC-GACg- -3' miRNA: 3'- gcUGCCGUCGUG---CGAGCUG-GaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 49683 | 0.68 | 0.528136 |
Target: 5'- gGuCGGCGGCGCGCgCaACCUGAa-- -3' miRNA: 3'- gCuGCCGUCGUGCGaGcUGGACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 48500 | 0.82 | 0.066563 |
Target: 5'- gCGACGGCAGCcgcagguaacagcGCGCUCGACCUG-Ca- -3' miRNA: 3'- -GCUGCCGUCG-------------UGCGAGCUGGACuGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 47719 | 0.7 | 0.393313 |
Target: 5'- gGGCGGCGGCuCGC-CG-CCUGuauCUGg -3' miRNA: 3'- gCUGCCGUCGuGCGaGCuGGACu--GAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 46799 | 0.75 | 0.203704 |
Target: 5'- aCGACGaGC-GCGCGCUCGGCCggcGGCa- -3' miRNA: 3'- -GCUGC-CGuCGUGCGAGCUGGa--CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 45874 | 0.71 | 0.350838 |
Target: 5'- gGACGGCAuCACGCUCGugauCCgcgGGCa- -3' miRNA: 3'- gCUGCCGUcGUGCGAGCu---GGa--CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 45212 | 0.69 | 0.429609 |
Target: 5'- aGGCGGCAuguccGcCGgGCUCGGCCUGAa-- -3' miRNA: 3'- gCUGCCGU-----C-GUgCGAGCUGGACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43443 | 0.68 | 0.487543 |
Target: 5'- uCGACGGCGaCGCGCUUGugCgGAUc- -3' miRNA: 3'- -GCUGCCGUcGUGCGAGCugGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43076 | 0.68 | 0.487543 |
Target: 5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3' miRNA: 3'- gcUGCCGUCGugcg---AGCUGGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 42247 | 0.67 | 0.559383 |
Target: 5'- aGGCGGCGGCAUcuGCUUcagGACCgcgaGCUGc -3' miRNA: 3'- gCUGCCGUCGUG--CGAG---CUGGac--UGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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