miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 43076 0.68 0.487543
Target:  5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3'
miRNA:   3'- gcUGCCGUCGugcg---AGCUGGACUGac -5'
23878 5' -57.7 NC_005262.1 + 47719 0.7 0.393313
Target:  5'- gGGCGGCGGCuCGC-CG-CCUGuauCUGg -3'
miRNA:   3'- gCUGCCGUCGuGCGaGCuGGACu--GAC- -5'
23878 5' -57.7 NC_005262.1 + 54843 0.7 0.393313
Target:  5'- cCGACacGCAGCGCGC-CGACC-GGCUc -3'
miRNA:   3'- -GCUGc-CGUCGUGCGaGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 35231 0.7 0.4022
Target:  5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3'
miRNA:   3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 45212 0.69 0.429609
Target:  5'- aGGCGGCAuguccGcCGgGCUCGGCCUGAa-- -3'
miRNA:   3'- gCUGCCGU-----C-GUgCGAGCUGGACUgac -5'
23878 5' -57.7 NC_005262.1 + 23453 0.69 0.467802
Target:  5'- aCGACuGGC-GCAUGCgCGGCCUGgacgaaugGCUGg -3'
miRNA:   3'- -GCUG-CCGuCGUGCGaGCUGGAC--------UGAC- -5'
23878 5' -57.7 NC_005262.1 + 12550 0.68 0.477622
Target:  5'- gCGGCGGCAGguCGCggcggcgcucgUCGAgCUGcuGCUGc -3'
miRNA:   3'- -GCUGCCGUCguGCG-----------AGCUgGAC--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 3692 0.68 0.487543
Target:  5'- aCGACGGUgauGCcgGCGC-CGACaauCUGACUGa -3'
miRNA:   3'- -GCUGCCGu--CG--UGCGaGCUG---GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 43443 0.68 0.487543
Target:  5'- uCGACGGCGaCGCGCUUGugCgGAUc- -3'
miRNA:   3'- -GCUGCCGUcGUGCGAGCugGaCUGac -5'
23878 5' -57.7 NC_005262.1 + 63288 0.7 0.384555
Target:  5'- uGACGGCcggcuGCugGCUCGGCgUcGACg- -3'
miRNA:   3'- gCUGCCGu----CGugCGAGCUGgA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 40746 0.7 0.384555
Target:  5'- gGGCGGCGGCGCGUUccaaaucaaCGGCUauGCUGg -3'
miRNA:   3'- gCUGCCGUCGUGCGA---------GCUGGacUGAC- -5'
23878 5' -57.7 NC_005262.1 + 53812 0.71 0.359067
Target:  5'- uCGACaGCGGCACGggcaUCGAgCUGACg- -3'
miRNA:   3'- -GCUGcCGUCGUGCg---AGCUgGACUGac -5'
23878 5' -57.7 NC_005262.1 + 5074 0.79 0.110095
Target:  5'- gCGGCGGCGGCGCGUgCGACC-GGCUc -3'
miRNA:   3'- -GCUGCCGUCGUGCGaGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 11583 0.76 0.165127
Target:  5'- cCGGCGGCGGCcaGCGCUCGAgC-GACUu -3'
miRNA:   3'- -GCUGCCGUCG--UGCGAGCUgGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 15704 0.76 0.174108
Target:  5'- gGACGaGCAGCgcuauGCGCUCGACgUGGCg- -3'
miRNA:   3'- gCUGC-CGUCG-----UGCGAGCUGgACUGac -5'
23878 5' -57.7 NC_005262.1 + 20582 0.74 0.220079
Target:  5'- cCGGCGaGCAGCGCGCggCGcGCCgcagGGCUGu -3'
miRNA:   3'- -GCUGC-CGUCGUGCGa-GC-UGGa---CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 7534 0.72 0.289891
Target:  5'- uCGGCGGCgcgucGGCGCGCUCGAC--GACa- -3'
miRNA:   3'- -GCUGCCG-----UCGUGCGAGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 59401 0.71 0.326961
Target:  5'- aGGCGcGCGacaucgcacgcGCaACGCUCGACCUGaaGCUGg -3'
miRNA:   3'- gCUGC-CGU-----------CG-UGCGAGCUGGAC--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 45874 0.71 0.350838
Target:  5'- gGACGGCAuCACGCUCGugauCCgcgGGCa- -3'
miRNA:   3'- gCUGCCGUcGUGCGAGCu---GGa--CUGac -5'
23878 5' -57.7 NC_005262.1 + 11090 0.71 0.359067
Target:  5'- gGGCGGCccgcuGGCACGCUUGGCggGGCa- -3'
miRNA:   3'- gCUGCCG-----UCGUGCGAGCUGgaCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.