miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 41653 0.66 0.644566
Target:  5'- gCGAUgcgGGCAGC-CGCggCGGCCaGACg- -3'
miRNA:   3'- -GCUG---CCGUCGuGCGa-GCUGGaCUGac -5'
23878 5' -57.7 NC_005262.1 + 51224 0.72 0.311725
Target:  5'- cCGGCGGCAGCAgcaGCUCGACgaG-Cg- -3'
miRNA:   3'- -GCUGCCGUCGUg--CGAGCUGgaCuGac -5'
23878 5' -57.7 NC_005262.1 + 4836 0.73 0.276013
Target:  5'- cCGGCGGcCGGCugGUUCGACU--GCUGc -3'
miRNA:   3'- -GCUGCC-GUCGugCGAGCUGGacUGAC- -5'
23878 5' -57.7 NC_005262.1 + 57412 1.09 0.000716
Target:  5'- aCGACGGCAGCACGCUCGACCUGACUGa -3'
miRNA:   3'- -GCUGCCGUCGUGCGAGCUGGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 9363 0.67 0.591125
Target:  5'- cCGGuCGGC-GCGCGCggCGGCCUG-Cg- -3'
miRNA:   3'- -GCU-GCCGuCGUGCGa-GCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 50939 0.67 0.569918
Target:  5'- -cACGGCAGCGCgaaGCUCGGCaC-GACg- -3'
miRNA:   3'- gcUGCCGUCGUG---CGAGCUG-GaCUGac -5'
23878 5' -57.7 NC_005262.1 + 42247 0.67 0.559383
Target:  5'- aGGCGGCGGCAUcuGCUUcagGACCgcgaGCUGc -3'
miRNA:   3'- gCUGCCGUCGUG--CGAG---CUGGac--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 2736 0.68 0.528136
Target:  5'- uCGACGGC-GUAUccgGCaCGAUCUGGCUGc -3'
miRNA:   3'- -GCUGCCGuCGUG---CGaGCUGGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 31073 0.69 0.458087
Target:  5'- uCGGcCGGCAGCACGC-CGAgCUcGAUg- -3'
miRNA:   3'- -GCU-GCCGUCGUGCGaGCUgGA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 17089 0.69 0.438987
Target:  5'- gCGcCGGCuuguccacuGCGCGCgCGGCgCUGACUGc -3'
miRNA:   3'- -GCuGCCGu--------CGUGCGaGCUG-GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 30384 0.68 0.497559
Target:  5'- aCGACGGCGGgaACGUggcgccugCGACCUuGAgCUGg -3'
miRNA:   3'- -GCUGCCGUCg-UGCGa-------GCUGGA-CU-GAC- -5'
23878 5' -57.7 NC_005262.1 + 17406 0.66 0.633863
Target:  5'- cCGACGa-GGCGCGCcuguUCGGCCUuGAUUGc -3'
miRNA:   3'- -GCUGCcgUCGUGCG----AGCUGGA-CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 29608 0.7 0.411213
Target:  5'- gGGCGGCAGCucggaaugcaGCGuCUCGACCUucgugccggcGACg- -3'
miRNA:   3'- gCUGCCGUCG----------UGC-GAGCUGGA----------CUGac -5'
23878 5' -57.7 NC_005262.1 + 13677 0.66 0.623159
Target:  5'- --uCGGuCAGCgaGCGCUCGGCC-GGCUu -3'
miRNA:   3'- gcuGCC-GUCG--UGCGAGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 6901 0.68 0.497559
Target:  5'- cCGGCGaGCGuguuGuCGCGCUCGACCUG-Cg- -3'
miRNA:   3'- -GCUGC-CGU----C-GUGCGAGCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 13223 0.7 0.411213
Target:  5'- -aGCGGCAGCGgGCUCGGgCUG-Cg- -3'
miRNA:   3'- gcUGCCGUCGUgCGAGCUgGACuGac -5'
23878 5' -57.7 NC_005262.1 + 46799 0.75 0.203704
Target:  5'- aCGACGaGC-GCGCGCUCGGCCggcGGCa- -3'
miRNA:   3'- -GCUGC-CGuCGUGCGAGCUGGa--CUGac -5'
23878 5' -57.7 NC_005262.1 + 30768 0.66 0.601781
Target:  5'- gGGCGGUacgucagcaucaGGCGCaGCUUGGCgUUGGCUGc -3'
miRNA:   3'- gCUGCCG------------UCGUG-CGAGCUG-GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 31121 0.67 0.569918
Target:  5'- gCGGcCGGCAGCGCGaaCUCGAagcguucgcagaCCUGAUc- -3'
miRNA:   3'- -GCU-GCCGUCGUGC--GAGCU------------GGACUGac -5'
23878 5' -57.7 NC_005262.1 + 33183 0.69 0.448481
Target:  5'- uCGGCGGCGGCucgaucuucGCGCccuucagCGGCUUGGCg- -3'
miRNA:   3'- -GCUGCCGUCG---------UGCGa------GCUGGACUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.