Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23878 | 5' | -57.7 | NC_005262.1 | + | 32786 | 0.66 | 0.612462 |
Target: 5'- uCGAcacCGGCGGCGCGC-CGGCCa----- -3' miRNA: 3'- -GCU---GCCGUCGUGCGaGCUGGacugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 7534 | 0.72 | 0.289891 |
Target: 5'- uCGGCGGCgcgucGGCGCGCUCGAC--GACa- -3' miRNA: 3'- -GCUGCCG-----UCGUGCGAGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 34046 | 0.66 | 0.612462 |
Target: 5'- uCGAuCGGCAGU-UGCUCGAcgaccagaacCCgGACUGg -3' miRNA: 3'- -GCU-GCCGUCGuGCGAGCU----------GGaCUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 58563 | 0.66 | 0.601781 |
Target: 5'- aGGCGGCgagaagcugaucGGCACGC-CGGCauggaaugGGCUGa -3' miRNA: 3'- gCUGCCG------------UCGUGCGaGCUGga------CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 12956 | 0.67 | 0.580501 |
Target: 5'- gCGACGGCAucGCcgacCGCUCGGCgUcGACg- -3' miRNA: 3'- -GCUGCCGU--CGu---GCGAGCUGgA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 21582 | 0.67 | 0.569918 |
Target: 5'- gGGCGGCuacggcuacAGCAagaaGCUCGcggcgaacCCUGACUGc -3' miRNA: 3'- gCUGCCG---------UCGUg---CGAGCu-------GGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 55337 | 0.67 | 0.559383 |
Target: 5'- uCGACGaGUggaaAGcCGCGCUCGACgaGACg- -3' miRNA: 3'- -GCUGC-CG----UC-GUGCGAGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 59401 | 0.71 | 0.326961 |
Target: 5'- aGGCGcGCGacaucgcacgcGCaACGCUCGACCUGaaGCUGg -3' miRNA: 3'- gCUGC-CGU-----------CG-UGCGAGCUGGAC--UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 53812 | 0.71 | 0.359067 |
Target: 5'- uCGACaGCGGCACGggcaUCGAgCUGACg- -3' miRNA: 3'- -GCUGcCGUCGUGCg---AGCUgGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 40746 | 0.7 | 0.384555 |
Target: 5'- gGGCGGCGGCGCGUUccaaaucaaCGGCUauGCUGg -3' miRNA: 3'- gCUGCCGUCGUGCGA---------GCUGGacUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 63288 | 0.7 | 0.384555 |
Target: 5'- uGACGGCcggcuGCugGCUCGGCgUcGACg- -3' miRNA: 3'- gCUGCCGu----CGugCGAGCUGgA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 47719 | 0.7 | 0.393313 |
Target: 5'- gGGCGGCGGCuCGC-CG-CCUGuauCUGg -3' miRNA: 3'- gCUGCCGUCGuGCGaGCuGGACu--GAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 54843 | 0.7 | 0.393313 |
Target: 5'- cCGACacGCAGCGCGC-CGACC-GGCUc -3' miRNA: 3'- -GCUGc-CGUCGUGCGaGCUGGaCUGAc -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 35231 | 0.7 | 0.4022 |
Target: 5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3' miRNA: 3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43443 | 0.68 | 0.487543 |
Target: 5'- uCGACGGCGaCGCGCUUGugCgGAUc- -3' miRNA: 3'- -GCUGCCGUcGUGCGAGCugGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43076 | 0.68 | 0.487543 |
Target: 5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3' miRNA: 3'- gcUGCCGUCGugcg---AGCUGGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 49683 | 0.68 | 0.528136 |
Target: 5'- gGuCGGCGGCGCGCgCaACCUGAa-- -3' miRNA: 3'- gCuGCCGUCGUGCGaGcUGGACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 41262 | 0.67 | 0.538486 |
Target: 5'- uGACGGCGGCgaucACGCagauUCGGCCgcgcgugGGCg- -3' miRNA: 3'- gCUGCCGUCG----UGCG----AGCUGGa------CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30572 | 0.67 | 0.538486 |
Target: 5'- aCGACGGCAGCAaGgaCGGCaaGACc- -3' miRNA: 3'- -GCUGCCGUCGUgCgaGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 52957 | 0.67 | 0.538486 |
Target: 5'- uCGcCGGCGGCAaggUGCUCGAgCCgGGCa- -3' miRNA: 3'- -GCuGCCGUCGU---GCGAGCU-GGaCUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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