Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23878 | 5' | -57.7 | NC_005262.1 | + | 15704 | 0.76 | 0.174108 |
Target: 5'- gGACGaGCAGCgcuauGCGCUCGACgUGGCg- -3' miRNA: 3'- gCUGC-CGUCG-----UGCGAGCUGgACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 11583 | 0.76 | 0.165127 |
Target: 5'- cCGGCGGCGGCcaGCGCUCGAgC-GACUu -3' miRNA: 3'- -GCUGCCGUCG--UGCGAGCUgGaCUGAc -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 5074 | 0.79 | 0.110095 |
Target: 5'- gCGGCGGCGGCGCGUgCGACC-GGCUc -3' miRNA: 3'- -GCUGCCGUCGUGCGaGCUGGaCUGAc -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 35231 | 0.7 | 0.4022 |
Target: 5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3' miRNA: 3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 45212 | 0.69 | 0.429609 |
Target: 5'- aGGCGGCAuguccGcCGgGCUCGGCCUGAa-- -3' miRNA: 3'- gCUGCCGU-----C-GUgCGAGCUGGACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 12956 | 0.67 | 0.580501 |
Target: 5'- gCGACGGCAucGCcgacCGCUCGGCgUcGACg- -3' miRNA: 3'- -GCUGCCGU--CGu---GCGAGCUGgA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 21582 | 0.67 | 0.569918 |
Target: 5'- gGGCGGCuacggcuacAGCAagaaGCUCGcggcgaacCCUGACUGc -3' miRNA: 3'- gCUGCCG---------UCGUg---CGAGCu-------GGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 55337 | 0.67 | 0.559383 |
Target: 5'- uCGACGaGUggaaAGcCGCGCUCGACgaGACg- -3' miRNA: 3'- -GCUGC-CG----UC-GUGCGAGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 52957 | 0.67 | 0.538486 |
Target: 5'- uCGcCGGCGGCAaggUGCUCGAgCCgGGCa- -3' miRNA: 3'- -GCuGCCGUCGU---GCGAGCU-GGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30572 | 0.67 | 0.538486 |
Target: 5'- aCGACGGCAGCAaGgaCGGCaaGACc- -3' miRNA: 3'- -GCUGCCGUCGUgCgaGCUGgaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 41262 | 0.67 | 0.538486 |
Target: 5'- uGACGGCGGCgaucACGCagauUCGGCCgcgcgugGGCg- -3' miRNA: 3'- gCUGCCGUCG----UGCG----AGCUGGa------CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 49683 | 0.68 | 0.528136 |
Target: 5'- gGuCGGCGGCGCGCgCaACCUGAa-- -3' miRNA: 3'- gCuGCCGUCGUGCGaGcUGGACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43076 | 0.68 | 0.487543 |
Target: 5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3' miRNA: 3'- gcUGCCGUCGugcg---AGCUGGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 43443 | 0.68 | 0.487543 |
Target: 5'- uCGACGGCGaCGCGCUUGugCgGAUc- -3' miRNA: 3'- -GCUGCCGUcGUGCGAGCugGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 3692 | 0.68 | 0.487543 |
Target: 5'- aCGACGGUgauGCcgGCGC-CGACaauCUGACUGa -3' miRNA: 3'- -GCUGCCGu--CG--UGCGaGCUG---GACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 12550 | 0.68 | 0.477622 |
Target: 5'- gCGGCGGCAGguCGCggcggcgcucgUCGAgCUGcuGCUGc -3' miRNA: 3'- -GCUGCCGUCguGCG-----------AGCUgGAC--UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 23453 | 0.69 | 0.467802 |
Target: 5'- aCGACuGGC-GCAUGCgCGGCCUGgacgaaugGCUGg -3' miRNA: 3'- -GCUG-CCGuCGUGCGaGCUGGAC--------UGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 48500 | 0.82 | 0.066563 |
Target: 5'- gCGACGGCAGCcgcagguaacagcGCGCUCGACCUG-Ca- -3' miRNA: 3'- -GCUGCCGUCG-------------UGCGAGCUGGACuGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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