miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 3' -57.7 NC_005262.1 + 1760 0.67 0.594204
Target:  5'- gCCGCaUCGaGGAg-GAGGaucgcgcGCGGCGAUGa -3'
miRNA:   3'- -GGCG-AGCaCCUagCUCC-------UGCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 4588 0.71 0.380617
Target:  5'- gCUGCUCG-GGcgUGAgcgcccgcaggaacGGGCGGUGACGg -3'
miRNA:   3'- -GGCGAGCaCCuaGCU--------------CCUGCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 5153 0.68 0.584829
Target:  5'- cCUGCUCGgcgcgcuGAUCGGuGACGGcCGGCGu -3'
miRNA:   3'- -GGCGAGCac-----CUAGCUcCUGCC-GCUGC- -5'
23879 3' -57.7 NC_005262.1 + 7625 0.67 0.647609
Target:  5'- aCCGgaCGuUGGccgaauGUCGAcgccGGCGGCGACGg -3'
miRNA:   3'- -GGCgaGC-ACC------UAGCUc---CUGCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 9731 0.66 0.699638
Target:  5'- aCGCgUCGUcaaggcgagcGGAuacgUCGAGGAgaaauuCGGCGGCa -3'
miRNA:   3'- gGCG-AGCA----------CCU----AGCUCCU------GCCGCUGc -5'
23879 3' -57.7 NC_005262.1 + 13445 0.69 0.483694
Target:  5'- gCCGCUCGcGGucGUCGcGGGCGcuucguccugcGCGGCGg -3'
miRNA:   3'- -GGCGAGCaCC--UAGCuCCUGC-----------CGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 14298 0.72 0.350198
Target:  5'- gCGUUgCGUGGA-CG-GGAgGGCGGCGg -3'
miRNA:   3'- gGCGA-GCACCUaGCuCCUgCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 16588 0.67 0.605695
Target:  5'- gCGCgUGUGcuGGUCGAGG-CGGCGAa- -3'
miRNA:   3'- gGCGaGCAC--CUAGCUCCuGCCGCUgc -5'
23879 3' -57.7 NC_005262.1 + 17184 0.69 0.487593
Target:  5'- aUCGCgUCGggcgGGAUcuguggcgucugcggCGAGGACGGCGcugGCGu -3'
miRNA:   3'- -GGCG-AGCa---CCUA---------------GCUCCUGCCGC---UGC- -5'
23879 3' -57.7 NC_005262.1 + 17232 0.67 0.616163
Target:  5'- gUCGUggucgUCGUGGGcgUCGcGGGAgCGGCGGCc -3'
miRNA:   3'- -GGCG-----AGCACCU--AGC-UCCU-GCCGCUGc -5'
23879 3' -57.7 NC_005262.1 + 21564 0.71 0.409198
Target:  5'- gCCGC-CGccUGGAaaCGAGGGCGGCuACGg -3'
miRNA:   3'- -GGCGaGC--ACCUa-GCUCCUGCCGcUGC- -5'
23879 3' -57.7 NC_005262.1 + 22268 0.66 0.668523
Target:  5'- gCGCaugCGUcGGAUC-AGuGACGGUGugGg -3'
miRNA:   3'- gGCGa--GCA-CCUAGcUC-CUGCCGCugC- -5'
23879 3' -57.7 NC_005262.1 + 22705 0.69 0.483694
Target:  5'- aCCGcCUCGcaUGGAUCGAcuGGAUGcuCGACGa -3'
miRNA:   3'- -GGC-GAGC--ACCUAGCU--CCUGCc-GCUGC- -5'
23879 3' -57.7 NC_005262.1 + 25385 0.66 0.699638
Target:  5'- aUCGCgca-GGAUCGGGaGACGGCcgaGGCGc -3'
miRNA:   3'- -GGCGagcaCCUAGCUC-CUGCCG---CUGC- -5'
23879 3' -57.7 NC_005262.1 + 27070 0.67 0.626643
Target:  5'- gCGUUCGUGcg-CGAGcuCGGCGACa -3'
miRNA:   3'- gGCGAGCACcuaGCUCcuGCCGCUGc -5'
23879 3' -57.7 NC_005262.1 + 27391 0.67 0.647609
Target:  5'- uCCGCgaaCGUGGAcuUCGGcGACgGGCGaACGc -3'
miRNA:   3'- -GGCGa--GCACCU--AGCUcCUG-CCGC-UGC- -5'
23879 3' -57.7 NC_005262.1 + 29927 0.69 0.491506
Target:  5'- aCGCUCGgcgauagcugaaGGA-CGAcccggacgcGGGCGGCGGCGa -3'
miRNA:   3'- gGCGAGCa-----------CCUaGCU---------CCUGCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 30903 0.68 0.564106
Target:  5'- gCCGCUCGcgc-UCGAGGAUGGCa--- -3'
miRNA:   3'- -GGCGAGCaccuAGCUCCUGCCGcugc -5'
23879 3' -57.7 NC_005262.1 + 32155 0.74 0.283624
Target:  5'- gCgGCaCGUGGAUCGAcuuccagaagGcGGCGGCGGCGg -3'
miRNA:   3'- -GgCGaGCACCUAGCU----------C-CUGCCGCUGC- -5'
23879 3' -57.7 NC_005262.1 + 33562 0.67 0.626643
Target:  5'- gUGCUCGacGAgcUCGAGGcCGGCGAg- -3'
miRNA:   3'- gGCGAGCacCU--AGCUCCuGCCGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.