miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 20738 0.67 0.809596
Target:  5'- uGCCGCgGCGCG-CGGugccggCCGGGUc- -3'
miRNA:   3'- -CGGCGgCGUGUaGCUuaa---GGUCCAcg -5'
23879 5' -53.7 NC_005262.1 + 43547 0.67 0.800085
Target:  5'- uGCCGCCuGC-CGUCcGGAUUCCucGcGCa -3'
miRNA:   3'- -CGGCGG-CGuGUAG-CUUAAGGucCaCG- -5'
23879 5' -53.7 NC_005262.1 + 58204 0.67 0.800085
Target:  5'- cGCCGCCGCGguguacUCGAAggaucacUUCAGGUucguGCg -3'
miRNA:   3'- -CGGCGGCGUgu----AGCUUa------AGGUCCA----CG- -5'
23879 5' -53.7 NC_005262.1 + 32687 0.67 0.800085
Target:  5'- cGCUGCCgGC-CGcCGGccUCCAGGUGg -3'
miRNA:   3'- -CGGCGG-CGuGUaGCUuaAGGUCCACg -5'
23879 5' -53.7 NC_005262.1 + 19795 0.67 0.800085
Target:  5'- gGUCGUCGCACAUCGGGcggucgcaagucUUCCcuuuuccgaccGGGUagucGCa -3'
miRNA:   3'- -CGGCGGCGUGUAGCUU------------AAGG-----------UCCA----CG- -5'
23879 5' -53.7 NC_005262.1 + 60055 0.67 0.798162
Target:  5'- cGCCugaGCCGCGCGgaacccaUCCAGGcGCa -3'
miRNA:   3'- -CGG---CGGCGUGUagcuua-AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 20104 0.67 0.797197
Target:  5'- cGUCGCCGCGCGaauUCGgcccggcuuggcuuGcgUUCAGGUcGCc -3'
miRNA:   3'- -CGGCGGCGUGU---AGC--------------UuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 16679 0.67 0.796231
Target:  5'- gGCCGCagccgggcgaggaGUGCAUCGucacgCAGGUGCu -3'
miRNA:   3'- -CGGCGg------------CGUGUAGCuuaagGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 31829 0.67 0.790399
Target:  5'- aGCUGCUGUuCAUCuaccugUCGGGUGCa -3'
miRNA:   3'- -CGGCGGCGuGUAGcuuaa-GGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 14386 0.67 0.790399
Target:  5'- aGCCGCauguGCugAUCGG-UUUgGcGGUGCg -3'
miRNA:   3'- -CGGCGg---CGugUAGCUuAAGgU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 54276 0.67 0.786478
Target:  5'- cCCGCCGCGCAuauugaaaagcggUCGGg--CCGcaaaucgcaccaguGGUGCg -3'
miRNA:   3'- cGGCGGCGUGU-------------AGCUuaaGGU--------------CCACG- -5'
23879 5' -53.7 NC_005262.1 + 49607 0.67 0.780549
Target:  5'- cGCUcgGCCGCgACGUCGcuaaCCAGGcGCu -3'
miRNA:   3'- -CGG--CGGCG-UGUAGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 5720 0.67 0.780549
Target:  5'- uGCCGUCGCGCAccUUGA---CCuuGGUGUu -3'
miRNA:   3'- -CGGCGGCGUGU--AGCUuaaGGu-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 6351 0.67 0.770546
Target:  5'- cGCCGCCGCGgCAUCcgcggaC-GGUGCc -3'
miRNA:   3'- -CGGCGGCGU-GUAGcuuaagGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 36974 0.67 0.770546
Target:  5'- cCCGUCGCgGCcUCGAAUUCCGa-UGCa -3'
miRNA:   3'- cGGCGGCG-UGuAGCUUAAGGUccACG- -5'
23879 5' -53.7 NC_005262.1 + 54105 0.68 0.750127
Target:  5'- cGCUGCUGCGCcUCGAcgUCgAcGGcGCc -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaAGgU-CCaCG- -5'
23879 5' -53.7 NC_005262.1 + 11406 0.68 0.750127
Target:  5'- cGCCgaaGCCGCGCcgCGccgggccgCCgaAGGUGCg -3'
miRNA:   3'- -CGG---CGGCGUGuaGCuuaa----GG--UCCACG- -5'
23879 5' -53.7 NC_005262.1 + 26274 0.68 0.750127
Target:  5'- cCUGCCGCACGacgCGGA--CCAcGUGCg -3'
miRNA:   3'- cGGCGGCGUGUa--GCUUaaGGUcCACG- -5'
23879 5' -53.7 NC_005262.1 + 58538 0.68 0.750127
Target:  5'- uGCUGCUGCACGagGcGUUCCaccaAGGcgGCg -3'
miRNA:   3'- -CGGCGGCGUGUagCuUAAGG----UCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 27684 0.68 0.750127
Target:  5'- cGCCGUauCGCGCAgcgUCGAAgaUCAGGUcaaagGCa -3'
miRNA:   3'- -CGGCG--GCGUGU---AGCUUaaGGUCCA-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.