miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2388 3' -49.5 NC_001416.1 + 38994 1.11 0.002493
Target:  5'- cAUCCCUCAAAACGAGGGAAAAUCCCCu -3'
miRNA:   3'- -UAGGGAGUUUUGCUCCCUUUUAGGGG- -5'
2388 3' -49.5 NC_001416.1 + 39038 0.81 0.233585
Target:  5'- cAUCCCUCAAAuUGGGGGAuugcuAUCCCUc -3'
miRNA:   3'- -UAGGGAGUUUuGCUCCCUuu---UAGGGG- -5'
2388 3' -49.5 NC_001416.1 + 39106 0.72 0.655601
Target:  5'- aAUCCCcCAAuuUGAGGGAuguuuuAUCCCUc -3'
miRNA:   3'- -UAGGGaGUUuuGCUCCCUuu----UAGGGG- -5'
2388 3' -49.5 NC_001416.1 + 10837 0.67 0.896966
Target:  5'- cUCCUUCG--GC--GGGAuGAUCCCCa -3'
miRNA:   3'- uAGGGAGUuuUGcuCCCUuUUAGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.