miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23880 5' -51.3 NC_005262.1 + 195 0.67 0.911475
Target:  5'- uUCAUGguCcACGCCG-GCGGGGGCGGCg -3'
miRNA:   3'- -GGUAU--GcUGUGGUaUGUCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 499 0.68 0.875541
Target:  5'- uCCAcguCGACGCCGaGCc--AGCAGCCg -3'
miRNA:   3'- -GGUau-GCUGUGGUaUGuccUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 5043 0.67 0.911475
Target:  5'- gCCGgcCGGCGCCugauCGGcGGGCAGgCCc -3'
miRNA:   3'- -GGUauGCUGUGGuau-GUC-CUCGUC-GG- -5'
23880 5' -51.3 NC_005262.1 + 5269 0.66 0.935217
Target:  5'- cUCGUGCaGCAgCAcggGCAGG-GCGGUCg -3'
miRNA:   3'- -GGUAUGcUGUgGUa--UGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 5875 0.67 0.900717
Target:  5'- aCCGUGCGGaugaaGCgAUcgacgucgaugucggGCGGGAGC-GCCu -3'
miRNA:   3'- -GGUAUGCUg----UGgUA---------------UGUCCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 6047 0.66 0.917834
Target:  5'- -gGUGCGGCACgAUaccgcaccACGGGGuugcgucaggccGCGGCCu -3'
miRNA:   3'- ggUAUGCUGUGgUA--------UGUCCU------------CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 6067 0.69 0.824046
Target:  5'- gCCuugACGAUACuCAUGCGGcGcgcgucguGGCGGCCu -3'
miRNA:   3'- -GGua-UGCUGUG-GUAUGUC-C--------UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 6622 0.66 0.940445
Target:  5'- ---aGCGACACgAgcgGCgAGGGGUcGCCg -3'
miRNA:   3'- gguaUGCUGUGgUa--UG-UCCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 7142 0.73 0.612539
Target:  5'- -gGUGCGACGCCAaACAGGcgaaacaccCGGCCg -3'
miRNA:   3'- ggUAUGCUGUGGUaUGUCCuc-------GUCGG- -5'
23880 5' -51.3 NC_005262.1 + 8129 0.68 0.867559
Target:  5'- cCCAUcguguuCGugACCggcGUGCcGGAcGCGGCCa -3'
miRNA:   3'- -GGUAu-----GCugUGG---UAUGuCCU-CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 9457 0.73 0.601423
Target:  5'- -uGUGCGGCACCAUccuGCAcGGuauGguGCCg -3'
miRNA:   3'- ggUAUGCUGUGGUA---UGU-CCu--CguCGG- -5'
23880 5' -51.3 NC_005262.1 + 10502 0.74 0.535601
Target:  5'- gCCAgcaugGCGGcCAgCAgcagcGCGGGGGCGGCCg -3'
miRNA:   3'- -GGUa----UGCU-GUgGUa----UGUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 10562 0.66 0.923912
Target:  5'- gCCGcGCGcagccGCAgCGUACcgcGGAGCAGCg -3'
miRNA:   3'- -GGUaUGC-----UGUgGUAUGu--CCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 10833 0.68 0.859325
Target:  5'- gCAUGCGcgucCGCCGcGCucaGGGGGCGGCa -3'
miRNA:   3'- gGUAUGCu---GUGGUaUG---UCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 12927 0.66 0.929706
Target:  5'- gCCGUGCGAUugCGUcgGCAccuGCGGCa -3'
miRNA:   3'- -GGUAUGCUGugGUA--UGUccuCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 12995 0.67 0.883265
Target:  5'- cCCGcGCGugACguggguguaCGcGCAGGAGCGcGCCa -3'
miRNA:   3'- -GGUaUGCugUG---------GUaUGUCCUCGU-CGG- -5'
23880 5' -51.3 NC_005262.1 + 13166 0.68 0.875541
Target:  5'- cUCGgcgGCGACAuuuCCAgcaACAGGuuCAGCCg -3'
miRNA:   3'- -GGUa--UGCUGU---GGUa--UGUCCucGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 13740 0.7 0.775386
Target:  5'- uUCGUcucCGGCuuCGUcuCGGGAGCAGCCg -3'
miRNA:   3'- -GGUAu--GCUGugGUAu-GUCCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 13800 0.69 0.805128
Target:  5'- gCCGgcGCGGCuuCAUcgGCGGGAGCGGgCg -3'
miRNA:   3'- -GGUa-UGCUGugGUA--UGUCCUCGUCgG- -5'
23880 5' -51.3 NC_005262.1 + 13982 0.68 0.859325
Target:  5'- uCCAUcgcGCGGCcgaucgggccggACgGUGCAGGGGCGuCCg -3'
miRNA:   3'- -GGUA---UGCUG------------UGgUAUGUCCUCGUcGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.