miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23880 5' -51.3 NC_005262.1 + 6047 0.66 0.917834
Target:  5'- -gGUGCGGCACgAUaccgcaccACGGGGuugcgucaggccGCGGCCu -3'
miRNA:   3'- ggUAUGCUGUGgUA--------UGUCCU------------CGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 30224 0.67 0.911475
Target:  5'- aCAacgGCGACAUCAcgGCgaAGGAGUaucagAGCCa -3'
miRNA:   3'- gGUa--UGCUGUGGUa-UG--UCCUCG-----UCGG- -5'
23880 5' -51.3 NC_005262.1 + 5043 0.67 0.911475
Target:  5'- gCCGgcCGGCGCCugauCGGcGGGCAGgCCc -3'
miRNA:   3'- -GGUauGCUGUGGuau-GUC-CUCGUC-GG- -5'
23880 5' -51.3 NC_005262.1 + 31959 0.67 0.911475
Target:  5'- ---cGCGuGCACCcgACAGGuagaugaacAGCAGCUc -3'
miRNA:   3'- gguaUGC-UGUGGuaUGUCC---------UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 195 0.67 0.911475
Target:  5'- uUCAUGguCcACGCCG-GCGGGGGCGGCg -3'
miRNA:   3'- -GGUAU--GcUGUGGUaUGUCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 48649 0.67 0.910823
Target:  5'- -gGUGCuGACGCa--GCAGGAGCucgacaagcugccGGCCa -3'
miRNA:   3'- ggUAUG-CUGUGguaUGUCCUCG-------------UCGG- -5'
23880 5' -51.3 NC_005262.1 + 45692 0.67 0.904835
Target:  5'- uUCGUGCG-CAUCGa--GGGccGGCAGCCg -3'
miRNA:   3'- -GGUAUGCuGUGGUaugUCC--UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 5875 0.67 0.900717
Target:  5'- aCCGUGCGGaugaaGCgAUcgacgucgaugucggGCGGGAGC-GCCu -3'
miRNA:   3'- -GGUAUGCUg----UGgUA---------------UGUCCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 59051 0.67 0.897917
Target:  5'- uCCG--UGGCGCCG-GCAGGAGCucgAGCa -3'
miRNA:   3'- -GGUauGCUGUGGUaUGUCCUCG---UCGg -5'
23880 5' -51.3 NC_005262.1 + 50295 0.67 0.897917
Target:  5'- cCCGUgACGGcCGCgCGgaUugAGGAGCcGGCCg -3'
miRNA:   3'- -GGUA-UGCU-GUG-GU--AugUCCUCG-UCGG- -5'
23880 5' -51.3 NC_005262.1 + 53782 0.67 0.890726
Target:  5'- aCGUcgGCGAUACCGgcaaccugaUGCAGGucgacAGCGGCa -3'
miRNA:   3'- gGUA--UGCUGUGGU---------AUGUCC-----UCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 58200 0.67 0.890726
Target:  5'- ---cGCGuCGCC-UGCGGaGAGCGGCg -3'
miRNA:   3'- gguaUGCuGUGGuAUGUC-CUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 31174 0.67 0.883265
Target:  5'- gCCAUACGGCGugGUGCGcugcuGGGuaGGCCa -3'
miRNA:   3'- -GGUAUGCUGUggUAUGU-----CCUcgUCGG- -5'
23880 5' -51.3 NC_005262.1 + 25703 0.67 0.883265
Target:  5'- gCAgacgGCGAC-CCAUACGGGuacGuCAGCa -3'
miRNA:   3'- gGUa---UGCUGuGGUAUGUCCu--C-GUCGg -5'
23880 5' -51.3 NC_005262.1 + 49706 0.67 0.883265
Target:  5'- aCC--GCGACGgCGUGcCGGGcggcgaaccGGCGGCCg -3'
miRNA:   3'- -GGuaUGCUGUgGUAU-GUCC---------UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 47879 0.67 0.883265
Target:  5'- gCCGauCGAUACCAgAgGGGAGCccgGGCUa -3'
miRNA:   3'- -GGUauGCUGUGGUaUgUCCUCG---UCGG- -5'
23880 5' -51.3 NC_005262.1 + 12995 0.67 0.883265
Target:  5'- cCCGcGCGugACguggguguaCGcGCAGGAGCGcGCCa -3'
miRNA:   3'- -GGUaUGCugUG---------GUaUGUCCUCGU-CGG- -5'
23880 5' -51.3 NC_005262.1 + 62841 0.67 0.883265
Target:  5'- gCCAcggcuCGACGCgGUACgAGGAugGCAcGCCg -3'
miRNA:   3'- -GGUau---GCUGUGgUAUG-UCCU--CGU-CGG- -5'
23880 5' -51.3 NC_005262.1 + 63084 0.68 0.875541
Target:  5'- gUAUGCGGCGgCGUGCAaGGcGCuGCUg -3'
miRNA:   3'- gGUAUGCUGUgGUAUGU-CCuCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 51056 0.68 0.875541
Target:  5'- aUCAUcgACgGGCACCAU-CAGGuGCucGCCg -3'
miRNA:   3'- -GGUA--UG-CUGUGGUAuGUCCuCGu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.