miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 3' -51.1 NC_005262.1 + 44902 0.66 0.940446
Target:  5'- aGGCcgugGUCGGGACuGGAuGCGgcgCAAg- -3'
miRNA:   3'- gCCGa---UAGCCCUG-CCU-UGCaa-GUUag -5'
23881 3' -51.1 NC_005262.1 + 36761 0.67 0.917835
Target:  5'- aGGUcgauggCGGGGCGGGcUGcUUCGAUCa -3'
miRNA:   3'- gCCGaua---GCCCUGCCUuGC-AAGUUAG- -5'
23881 3' -51.1 NC_005262.1 + 43844 0.67 0.917835
Target:  5'- uCGGCUAcaUCGGGACGuGGgaugacuacuGCGUggCAAa- -3'
miRNA:   3'- -GCCGAU--AGCCCUGC-CU----------UGCAa-GUUag -5'
23881 3' -51.1 NC_005262.1 + 11301 0.67 0.897918
Target:  5'- uGGCgucGUCGGGA-GGGACGgugaagaAAUCg -3'
miRNA:   3'- gCCGa--UAGCCCUgCCUUGCaag----UUAG- -5'
23881 3' -51.1 NC_005262.1 + 46240 0.67 0.890726
Target:  5'- aCGGC-AUCGGuauCGGcGCGUUCGcgCa -3'
miRNA:   3'- -GCCGaUAGCCcu-GCCuUGCAAGUuaG- -5'
23881 3' -51.1 NC_005262.1 + 987 0.68 0.867559
Target:  5'- uGGCgaccugCGGGGCGGGGCGgugUAGa- -3'
miRNA:   3'- gCCGaua---GCCCUGCCUUGCaa-GUUag -5'
23881 3' -51.1 NC_005262.1 + 7678 0.68 0.867559
Target:  5'- uCGGCgcgGUCGGGucgACGaAACGcaugUCGAUCg -3'
miRNA:   3'- -GCCGa--UAGCCC---UGCcUUGCa---AGUUAG- -5'
23881 3' -51.1 NC_005262.1 + 4435 0.68 0.859326
Target:  5'- gGGCUucaCGGGGCGGcuccgGGCgGUUCGAUa -3'
miRNA:   3'- gCCGAua-GCCCUGCC-----UUG-CAAGUUAg -5'
23881 3' -51.1 NC_005262.1 + 30183 0.69 0.833201
Target:  5'- gCGGCUuuuccugcgacGUCGGGGCGacuGCGguggccUCGAUCg -3'
miRNA:   3'- -GCCGA-----------UAGCCCUGCcu-UGCa-----AGUUAG- -5'
23881 3' -51.1 NC_005262.1 + 17279 0.7 0.795385
Target:  5'- gGGCUGcugCGcGGGCaGGGGCGUcgCGGUCg -3'
miRNA:   3'- gCCGAUa--GC-CCUG-CCUUGCAa-GUUAG- -5'
23881 3' -51.1 NC_005262.1 + 38237 0.71 0.733662
Target:  5'- aCGGCUgccgucugGUUGGGagcGCGGAAUaUUCGAUCu -3'
miRNA:   3'- -GCCGA--------UAGCCC---UGCCUUGcAAGUUAG- -5'
23881 3' -51.1 NC_005262.1 + 2172 0.72 0.634813
Target:  5'- gCGGCUAUUGucGGACGGcuGCGUcucguaggcuUCGAUCg -3'
miRNA:   3'- -GCCGAUAGC--CCUGCCu-UGCA----------AGUUAG- -5'
23881 3' -51.1 NC_005262.1 + 56461 1.1 0.002911
Target:  5'- gCGGCUAUCGGGACGGAACGUUCAAUCu -3'
miRNA:   3'- -GCCGAUAGCCCUGCCUUGCAAGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.