miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 5' -54.9 NC_005262.1 + 30884 0.67 0.763185
Target:  5'- gGCGAGcgucgcGCGUgcgacGCCGCcggcuuggccgacguUCGAcgCGGCGa -3'
miRNA:   3'- -CGCUCu-----UGCA-----CGGCG---------------AGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 12916 0.67 0.75917
Target:  5'- uUGAcGAGCGcGCCGUgCGAuugcGUCGGCa -3'
miRNA:   3'- cGCU-CUUGCaCGGCGaGCU----UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 52195 0.67 0.75917
Target:  5'- aGCGGGAuCGUGUggaaguCGCUCGAGcgcUGGCc -3'
miRNA:   3'- -CGCUCUuGCACG------GCGAGCUUa--GCCGc -5'
23881 5' -54.9 NC_005262.1 + 20486 0.67 0.75917
Target:  5'- gGCGAGuGCGUaaucGCgCGCaccaUCGGcgCGGCGc -3'
miRNA:   3'- -CGCUCuUGCA----CG-GCG----AGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 43323 0.67 0.756146
Target:  5'- cCGAGGAgGaaGCCGCugaacaggcggcgaUCGAcgCGGCGa -3'
miRNA:   3'- cGCUCUUgCa-CGGCG--------------AGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 34147 0.67 0.749048
Target:  5'- cGCGGGcGGCaUGCCGCUCGcugccgaugccGGUugCGGCGu -3'
miRNA:   3'- -CGCUC-UUGcACGGCGAGC-----------UUA--GCCGC- -5'
23881 5' -54.9 NC_005262.1 + 56433 0.67 0.749048
Target:  5'- cGCGAGGgcaaaaagcGCGUGCUGaUCGg--CGGCa -3'
miRNA:   3'- -CGCUCU---------UGCACGGCgAGCuuaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 52719 0.67 0.749048
Target:  5'- aGCGGGc-CGcccuuugGCCGCUCGGGcUCaGGCGa -3'
miRNA:   3'- -CGCUCuuGCa------CGGCGAGCUU-AG-CCGC- -5'
23881 5' -54.9 NC_005262.1 + 57954 0.67 0.738811
Target:  5'- -gGAGGGCGcgaGCgCGCUUGAaAUUGGCGc -3'
miRNA:   3'- cgCUCUUGCa--CG-GCGAGCU-UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 53243 0.67 0.738811
Target:  5'- uGCGGcuGCGcgcgGCCGgUCGcGUCGGCa -3'
miRNA:   3'- -CGCUcuUGCa---CGGCgAGCuUAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 58888 0.67 0.728471
Target:  5'- uCGAGAgcaaacugcccgACGUcacGCCGaagcaggUCGAGUCGGCGc -3'
miRNA:   3'- cGCUCU------------UGCA---CGGCg------AGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 61527 0.67 0.727432
Target:  5'- aCGAGAaacuugcGCGgGCCGUcaUCGAcgCGGCc -3'
miRNA:   3'- cGCUCU-------UGCaCGGCG--AGCUuaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 35690 0.67 0.718038
Target:  5'- aGCGGGcACGgaagcauCCGCUCcGGcGUCGGCGg -3'
miRNA:   3'- -CGCUCuUGCac-----GGCGAG-CU-UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 48784 0.67 0.714892
Target:  5'- aGCGcAGGACGUGCgcgaGCUcaCGAgccguaucccggucGUCGGCa -3'
miRNA:   3'- -CGC-UCUUGCACGg---CGA--GCU--------------UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 17843 0.67 0.714892
Target:  5'- aGCGGGAACagguacucgaUGCCGUccUCGAcguagcccgacuugAUCGGCGc -3'
miRNA:   3'- -CGCUCUUGc---------ACGGCG--AGCU--------------UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 43086 0.68 0.707524
Target:  5'- cGCGAccguGAugG-GCUGCgccuUCGAAgUCGGCGa -3'
miRNA:   3'- -CGCU----CUugCaCGGCG----AGCUU-AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 6981 0.68 0.707524
Target:  5'- cGCGuacucaGGCGcuccaGCCGCUCGAcGUCGGCc -3'
miRNA:   3'- -CGCuc----UUGCa----CGGCGAGCU-UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 13434 0.68 0.707524
Target:  5'- uCGAcGAAUGcGCCGCUCGcGGUCGucGCGg -3'
miRNA:   3'- cGCU-CUUGCaCGGCGAGC-UUAGC--CGC- -5'
23881 5' -54.9 NC_005262.1 + 56717 0.68 0.707524
Target:  5'- -gGAGGACGUGuCCGaggCG--UCGGCGu -3'
miRNA:   3'- cgCUCUUGCAC-GGCga-GCuuAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 2568 0.68 0.707524
Target:  5'- cGCGAGAACGUcUCGgagaCGAGcCGGCGg -3'
miRNA:   3'- -CGCUCUUGCAcGGCga--GCUUaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.