miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23882 3' -55.1 NC_005262.1 + 52386 0.66 0.782227
Target:  5'- ---cGGCGGC-CCG--GCGCgGCGCGg -3'
miRNA:   3'- cuuuCUGCCGaGGCacUGCGaCGUGC- -5'
23882 3' -55.1 NC_005262.1 + 25397 0.66 0.782227
Target:  5'- cGGGAGACGGC--CGaGGCGCUGUuuCGg -3'
miRNA:   3'- -CUUUCUGCCGagGCaCUGCGACGu-GC- -5'
23882 3' -55.1 NC_005262.1 + 12424 0.66 0.782227
Target:  5'- -cGAGACGGUagCCGagccGAUGCggcGCACGa -3'
miRNA:   3'- cuUUCUGCCGa-GGCa---CUGCGa--CGUGC- -5'
23882 3' -55.1 NC_005262.1 + 49218 0.66 0.782227
Target:  5'- cGAGGGCGGcCUCgGcGGCGCgcaguccGCGCGc -3'
miRNA:   3'- cUUUCUGCC-GAGgCaCUGCGa------CGUGC- -5'
23882 3' -55.1 NC_005262.1 + 11784 0.66 0.773299
Target:  5'- --uGGGCGcGCUCCucuacccucacaagGugGCUGCAUGa -3'
miRNA:   3'- cuuUCUGC-CGAGGca------------CugCGACGUGC- -5'
23882 3' -55.1 NC_005262.1 + 51855 0.66 0.7723
Target:  5'- uGAAGcGCGGCgCCGcgaacGACGCgaGCACGa -3'
miRNA:   3'- cUUUC-UGCCGaGGCa----CUGCGa-CGUGC- -5'
23882 3' -55.1 NC_005262.1 + 14311 0.66 0.7723
Target:  5'- gGGAGGGCGGCggaaCCGccGA-GCUGgGCGg -3'
miRNA:   3'- -CUUUCUGCCGa---GGCa-CUgCGACgUGC- -5'
23882 3' -55.1 NC_005262.1 + 43590 0.66 0.76223
Target:  5'- -uGAGGCGGCUuuG-GACGagGCACc -3'
miRNA:   3'- cuUUCUGCCGAggCaCUGCgaCGUGc -5'
23882 3' -55.1 NC_005262.1 + 17556 0.66 0.76223
Target:  5'- -cGAGGCGGCagCCGcGGCGgC-GCGCGa -3'
miRNA:   3'- cuUUCUGCCGa-GGCaCUGC-GaCGUGC- -5'
23882 3' -55.1 NC_005262.1 + 3415 0.66 0.76223
Target:  5'- -cGAGACGGCgagCCGcauCGCUucaGCGCGc -3'
miRNA:   3'- cuUUCUGCCGa--GGCacuGCGA---CGUGC- -5'
23882 3' -55.1 NC_005262.1 + 39956 0.66 0.752029
Target:  5'- cAAGGGCGGCgugCCGgccuACGUUGC-CGa -3'
miRNA:   3'- cUUUCUGCCGa--GGCac--UGCGACGuGC- -5'
23882 3' -55.1 NC_005262.1 + 52359 0.66 0.741707
Target:  5'- uGAAGGCGGa--CGgGACGCUGgACGc -3'
miRNA:   3'- cUUUCUGCCgagGCaCUGCGACgUGC- -5'
23882 3' -55.1 NC_005262.1 + 5764 0.66 0.741707
Target:  5'- aGAAGGACGGUcCUGcccuUGcuGCGCUGUACu -3'
miRNA:   3'- -CUUUCUGCCGaGGC----AC--UGCGACGUGc -5'
23882 3' -55.1 NC_005262.1 + 59031 0.66 0.740669
Target:  5'- cGAGAGGCuGaGCucagugaUCCGUGGCGCcgGCAgGa -3'
miRNA:   3'- -CUUUCUG-C-CG-------AGGCACUGCGa-CGUgC- -5'
23882 3' -55.1 NC_005262.1 + 6524 0.66 0.731277
Target:  5'- ----cGCGGg-CCGUGA-GCUGCGCGa -3'
miRNA:   3'- cuuucUGCCgaGGCACUgCGACGUGC- -5'
23882 3' -55.1 NC_005262.1 + 22634 0.66 0.731277
Target:  5'- ---cGGCGGUgcccUCC-UGcgcGCGCUGCACGg -3'
miRNA:   3'- cuuuCUGCCG----AGGcAC---UGCGACGUGC- -5'
23882 3' -55.1 NC_005262.1 + 17396 0.67 0.720749
Target:  5'- ---cGGCGGCcgacaaugCCGaGACGCUGgGCGc -3'
miRNA:   3'- cuuuCUGCCGa-------GGCaCUGCGACgUGC- -5'
23882 3' -55.1 NC_005262.1 + 30385 0.67 0.720749
Target:  5'- ---cGACGGCgggaaCGUGGCGcCUGCGa- -3'
miRNA:   3'- cuuuCUGCCGag---GCACUGC-GACGUgc -5'
23882 3' -55.1 NC_005262.1 + 58823 0.67 0.710134
Target:  5'- uGAAGGcAUGGCUgCUGcGGCGCUucgGCACGc -3'
miRNA:   3'- -CUUUC-UGCCGA-GGCaCUGCGA---CGUGC- -5'
23882 3' -55.1 NC_005262.1 + 56426 0.67 0.699444
Target:  5'- cAAGGACGGCccgaCCGUcguggcGACGCcuaaGCGCGg -3'
miRNA:   3'- cUUUCUGCCGa---GGCA------CUGCGa---CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.