miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23882 5' -62.5 NC_005262.1 + 10524 0.66 0.44645
Target:  5'- -gCG-CGGGgGCggccgaaacggcuauGCCGACGCGaCCgGCCg -3'
miRNA:   3'- caGCaGCUCgCG---------------CGGCUGCGC-GG-CGG- -5'
23882 5' -62.5 NC_005262.1 + 49448 0.66 0.442801
Target:  5'- --aGUCGAcGCGCGCaagcACGUcgcaacuucGCCGCCc -3'
miRNA:   3'- cagCAGCU-CGCGCGgc--UGCG---------CGGCGG- -5'
23882 5' -62.5 NC_005262.1 + 3086 0.66 0.442801
Target:  5'- uGUCGUCGuccauccccGaCGCGCCcGCgaagaagcccaGCGUCGCCa -3'
miRNA:   3'- -CAGCAGCu--------C-GCGCGGcUG-----------CGCGGCGG- -5'
23882 5' -62.5 NC_005262.1 + 43068 0.66 0.442801
Target:  5'- --gGUCGAGC-UGCCGAgcgaCGCGaCCGUg -3'
miRNA:   3'- cagCAGCUCGcGCGGCU----GCGC-GGCGg -5'
23882 5' -62.5 NC_005262.1 + 56440 0.66 0.442801
Target:  5'- -cCGUCGuGGCGaCGCCuaaGCGCgGCUa -3'
miRNA:   3'- caGCAGC-UCGC-GCGGcugCGCGgCGG- -5'
23882 5' -62.5 NC_005262.1 + 33117 0.66 0.442801
Target:  5'- --gGUCGAGCGcCGUCca-GCGuCCGCUg -3'
miRNA:   3'- cagCAGCUCGC-GCGGcugCGC-GGCGG- -5'
23882 5' -62.5 NC_005262.1 + 52965 0.66 0.442801
Target:  5'- ----cUGAGCGCgGCgGACGCGCaugCGCUg -3'
miRNA:   3'- cagcaGCUCGCG-CGgCUGCGCG---GCGG- -5'
23882 5' -62.5 NC_005262.1 + 56969 0.66 0.442801
Target:  5'- uUCG-CGGGCGUgGUCGGCaaGaCCGCCu -3'
miRNA:   3'- cAGCaGCUCGCG-CGGCUGcgC-GGCGG- -5'
23882 5' -62.5 NC_005262.1 + 40362 0.66 0.442801
Target:  5'- aGUCGUCGgacGGCuCGauGACGCGgcucaugcugcCCGCCg -3'
miRNA:   3'- -CAGCAGC---UCGcGCggCUGCGC-----------GGCGG- -5'
23882 5' -62.5 NC_005262.1 + 32046 0.66 0.442801
Target:  5'- uGUUGUgGAccGUGCGCUuGCGCGacaugcgaCCGCCg -3'
miRNA:   3'- -CAGCAgCU--CGCGCGGcUGCGC--------GGCGG- -5'
23882 5' -62.5 NC_005262.1 + 33168 0.66 0.43736
Target:  5'- cGUCGUCGAgaugccggGCaagaccuaccacuuuGCGCCGACGCaggacgacgagcGCCacauuGCCg -3'
miRNA:   3'- -CAGCAGCU--------CG---------------CGCGGCUGCG------------CGG-----CGG- -5'
23882 5' -62.5 NC_005262.1 + 20484 0.66 0.43736
Target:  5'- -gCGgCGAGUGCGUaaucgcgcgcaccauCGGCGCGgCGCUc -3'
miRNA:   3'- caGCaGCUCGCGCG---------------GCUGCGCgGCGG- -5'
23882 5' -62.5 NC_005262.1 + 8512 0.66 0.433753
Target:  5'- cUCGUCGGaCaUGCCGAUGCGgccgaaCGCCg -3'
miRNA:   3'- cAGCAGCUcGcGCGGCUGCGCg-----GCGG- -5'
23882 5' -62.5 NC_005262.1 + 37819 0.66 0.433753
Target:  5'- uUCGUCGGGCGU--CGACGgGUauuccUGCCa -3'
miRNA:   3'- cAGCAGCUCGCGcgGCUGCgCG-----GCGG- -5'
23882 5' -62.5 NC_005262.1 + 39057 0.66 0.433753
Target:  5'- ---uUCGGccGCaCGCCGAuCGCGCgCGCCa -3'
miRNA:   3'- cagcAGCU--CGcGCGGCU-GCGCG-GCGG- -5'
23882 5' -62.5 NC_005262.1 + 4647 0.66 0.433753
Target:  5'- -gCGUCcuccauGCGCGCggCGACGCgGCCcgGCCg -3'
miRNA:   3'- caGCAGcu----CGCGCG--GCUGCG-CGG--CGG- -5'
23882 5' -62.5 NC_005262.1 + 28261 0.66 0.433753
Target:  5'- -gCGcUCGAugaacaGCGUcacgGCCGGCGCuGUCGCCu -3'
miRNA:   3'- caGC-AGCU------CGCG----CGGCUGCG-CGGCGG- -5'
23882 5' -62.5 NC_005262.1 + 50143 0.66 0.433753
Target:  5'- --aGUgGAGCGagccugaGCUG-CGCGaCCGCCu -3'
miRNA:   3'- cagCAgCUCGCg------CGGCuGCGC-GGCGG- -5'
23882 5' -62.5 NC_005262.1 + 13085 0.66 0.432855
Target:  5'- cUUGUCGAGgaaggucUGCGCCuucuCGCGCgaGCCg -3'
miRNA:   3'- cAGCAGCUC-------GCGCGGcu--GCGCGg-CGG- -5'
23882 5' -62.5 NC_005262.1 + 29646 0.66 0.424814
Target:  5'- aUCGgcagCGAGCGgcaUGCCGccCGCGcCCGCg -3'
miRNA:   3'- cAGCa---GCUCGC---GCGGCu-GCGC-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.