miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23883 3' -52.9 NC_005262.1 + 52817 0.66 0.868854
Target:  5'- aGUGGCAggcgCUCGGCgagCGGCugaaggcugcgCUCACGCa -3'
miRNA:   3'- -CGUUGUaa--GGGUCGa--GUCG-----------GAGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 56529 0.66 0.868854
Target:  5'- cCGugGUUCCCGGCaUCcGUCgagcaGCGCg -3'
miRNA:   3'- cGUugUAAGGGUCG-AGuCGGag---UGCG- -5'
23883 3' -52.9 NC_005262.1 + 3542 0.66 0.868854
Target:  5'- -uGACAcUgCCGGCguaucgCGGCCUUgACGCg -3'
miRNA:   3'- cgUUGUaAgGGUCGa-----GUCGGAG-UGCG- -5'
23883 3' -52.9 NC_005262.1 + 49205 0.66 0.868854
Target:  5'- cCGGCAUgcuggCCgAGggCGGCCUCggcgGCGCg -3'
miRNA:   3'- cGUUGUAa----GGgUCgaGUCGGAG----UGCG- -5'
23883 3' -52.9 NC_005262.1 + 24954 0.66 0.868854
Target:  5'- cGCGGCGcgCCCAGCUUcaggaacaGGCCggcUugGUc -3'
miRNA:   3'- -CGUUGUaaGGGUCGAG--------UCGGa--GugCG- -5'
23883 3' -52.9 NC_005262.1 + 30765 0.66 0.868854
Target:  5'- uCGugAUgCCUAcCUC-GCCUCGCGCg -3'
miRNA:   3'- cGUugUAaGGGUcGAGuCGGAGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 46156 0.66 0.860667
Target:  5'- gGCGAUcucugCCUgcuGCUCGGCgagCUCGCGCu -3'
miRNA:   3'- -CGUUGuaa--GGGu--CGAGUCG---GAGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 38338 0.66 0.860667
Target:  5'- aGCGGCAUcgCCUcGCgCAgcGCCUCGgGCa -3'
miRNA:   3'- -CGUUGUAa-GGGuCGaGU--CGGAGUgCG- -5'
23883 3' -52.9 NC_005262.1 + 57498 0.66 0.860667
Target:  5'- cCGACGaggcgCCgaAGUUCAGCgUCGCGCc -3'
miRNA:   3'- cGUUGUaa---GGg-UCGAGUCGgAGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 61275 0.66 0.859
Target:  5'- cGUGACAgacucgaucggCgCGGC-CAGCCUCGCGg -3'
miRNA:   3'- -CGUUGUaa---------GgGUCGaGUCGGAGUGCg -5'
23883 3' -52.9 NC_005262.1 + 26522 0.66 0.858162
Target:  5'- cGCGcACGUUgaaCgUGGCUCGGCCguuguucgugcgguUCACGCg -3'
miRNA:   3'- -CGU-UGUAA---GgGUCGAGUCGG--------------AGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 47299 0.66 0.852235
Target:  5'- cGCAGCg--CCCAGC---GCCUCGCccaGCu -3'
miRNA:   3'- -CGUUGuaaGGGUCGaguCGGAGUG---CG- -5'
23883 3' -52.9 NC_005262.1 + 14560 0.66 0.852235
Target:  5'- uCGGCAggcgUCUC-GCcgCGGCgCUCACGCg -3'
miRNA:   3'- cGUUGUa---AGGGuCGa-GUCG-GAGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 376 0.66 0.843567
Target:  5'- cGCAugGUUgCCuCGGCUUugcgGGCCUUcuccgACGCc -3'
miRNA:   3'- -CGUugUAA-GG-GUCGAG----UCGGAG-----UGCG- -5'
23883 3' -52.9 NC_005262.1 + 43201 0.66 0.843567
Target:  5'- cGCAACAg-CCCuGCggCGcGCCgCGCGCu -3'
miRNA:   3'- -CGUUGUaaGGGuCGa-GU-CGGaGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 10493 0.66 0.843567
Target:  5'- aGCAGCAgcgCCAGCauggCGGCCagcagcaGCGCg -3'
miRNA:   3'- -CGUUGUaagGGUCGa---GUCGGag-----UGCG- -5'
23883 3' -52.9 NC_005262.1 + 43824 0.66 0.843567
Target:  5'- gGCGACAcggCCgCgGGC-CGGCCgCGCGCg -3'
miRNA:   3'- -CGUUGUaa-GG-G-UCGaGUCGGaGUGCG- -5'
23883 3' -52.9 NC_005262.1 + 29775 0.66 0.834673
Target:  5'- cGCGGCGcacgaugcggCCCGGCgUCAcGCCgucCGCGCc -3'
miRNA:   3'- -CGUUGUaa--------GGGUCG-AGU-CGGa--GUGCG- -5'
23883 3' -52.9 NC_005262.1 + 52784 0.66 0.834673
Target:  5'- cGCGACAgccgCCUcGCucgUCAGCCgugcgaGCGCg -3'
miRNA:   3'- -CGUUGUaa--GGGuCG---AGUCGGag----UGCG- -5'
23883 3' -52.9 NC_005262.1 + 34545 0.66 0.834673
Target:  5'- aCGACAcgUUCCAGCUCGGCgacgaUCcgaacgucguguGCGCg -3'
miRNA:   3'- cGUUGUa-AGGGUCGAGUCGg----AG------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.