miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23883 5' -56 NC_005262.1 + 40487 0.66 0.70979
Target:  5'- gCGGCGCcuuGAUGC-GCUUGAuGGcgaacgacgGGGCg -3'
miRNA:   3'- -GUCGCGuu-CUACGuCGAGCU-CC---------UCCG- -5'
23883 5' -56 NC_005262.1 + 47987 0.66 0.70979
Target:  5'- gAGCGCGAGAUggcuuuugccGguGC-CGGGGuuGCc -3'
miRNA:   3'- gUCGCGUUCUA----------CguCGaGCUCCucCG- -5'
23883 5' -56 NC_005262.1 + 60294 0.66 0.70872
Target:  5'- aAGCGCAGGGUaagucgcugacGCAGauguaCGAGGAcgccuacGGCg -3'
miRNA:   3'- gUCGCGUUCUA-----------CGUCga---GCUCCU-------CCG- -5'
23883 5' -56 NC_005262.1 + 49103 0.66 0.699052
Target:  5'- uGGCGcCGGGcAUGguGCUCGcGaAGGCu -3'
miRNA:   3'- gUCGC-GUUC-UACguCGAGCuCcUCCG- -5'
23883 5' -56 NC_005262.1 + 44715 0.66 0.699052
Target:  5'- -cGCGCGAGGaaaUGCAGCUCGGcc--GCg -3'
miRNA:   3'- guCGCGUUCU---ACGUCGAGCUccucCG- -5'
23883 5' -56 NC_005262.1 + 49655 0.66 0.688249
Target:  5'- gCGGCcuGCAAGGcgGCGGCaUGGGGAuggucGGCg -3'
miRNA:   3'- -GUCG--CGUUCUa-CGUCGaGCUCCU-----CCG- -5'
23883 5' -56 NC_005262.1 + 15710 0.66 0.688249
Target:  5'- gCAGCGCu--AUGC-GCUCGAcGuGGCg -3'
miRNA:   3'- -GUCGCGuucUACGuCGAGCUcCuCCG- -5'
23883 5' -56 NC_005262.1 + 10521 0.66 0.688249
Target:  5'- gCAGCGCGGGG-GCGGC-CGAaacGGCu -3'
miRNA:   3'- -GUCGCGUUCUaCGUCGaGCUccuCCG- -5'
23883 5' -56 NC_005262.1 + 15719 0.66 0.688249
Target:  5'- uCGGCGCcgg--GCGGCUCGucGcGGCa -3'
miRNA:   3'- -GUCGCGuucuaCGUCGAGCucCuCCG- -5'
23883 5' -56 NC_005262.1 + 52664 0.66 0.683913
Target:  5'- -uGCGCAucgucgagcuuguGAaGCAGCUCGAgcaGGaAGGCc -3'
miRNA:   3'- guCGCGUu------------CUaCGUCGAGCU---CC-UCCG- -5'
23883 5' -56 NC_005262.1 + 48603 0.66 0.677393
Target:  5'- uCGGCcuGCAAuc-GCAGCUCGAcgaGGAGGa -3'
miRNA:   3'- -GUCG--CGUUcuaCGUCGAGCU---CCUCCg -5'
23883 5' -56 NC_005262.1 + 24887 0.66 0.666494
Target:  5'- cCGGCGCGuGAcagGCgAGCUCGGccagccGGAGGa -3'
miRNA:   3'- -GUCGCGUuCUa--CG-UCGAGCU------CCUCCg -5'
23883 5' -56 NC_005262.1 + 17191 0.66 0.666494
Target:  5'- -cGgGCGGGAucUGUGGCgucugcggCGAGGAcGGCg -3'
miRNA:   3'- guCgCGUUCU--ACGUCGa-------GCUCCU-CCG- -5'
23883 5' -56 NC_005262.1 + 57482 0.66 0.666494
Target:  5'- gAGgGCGAGAaGcCGGC-CGAcGAGGCg -3'
miRNA:   3'- gUCgCGUUCUaC-GUCGaGCUcCUCCG- -5'
23883 5' -56 NC_005262.1 + 35639 0.66 0.655563
Target:  5'- -cGCGCAGu-UGCGccgcgcGCUCGGGGAagauGGCg -3'
miRNA:   3'- guCGCGUUcuACGU------CGAGCUCCU----CCG- -5'
23883 5' -56 NC_005262.1 + 30845 0.66 0.655563
Target:  5'- -cGCGCAucgucgacgucgGGAUGaCGGC-CGAGGAGucGCc -3'
miRNA:   3'- guCGCGU------------UCUAC-GUCGaGCUCCUC--CG- -5'
23883 5' -56 NC_005262.1 + 29403 0.66 0.655563
Target:  5'- -cGCGCucgcGAUcGCGacGCUCGAGGAGcaGCa -3'
miRNA:   3'- guCGCGuu--CUA-CGU--CGAGCUCCUC--CG- -5'
23883 5' -56 NC_005262.1 + 29888 0.67 0.644611
Target:  5'- gCGGCGCuucaggAAGAUGaCGGUUCGGGcGAuGCg -3'
miRNA:   3'- -GUCGCG------UUCUAC-GUCGAGCUC-CUcCG- -5'
23883 5' -56 NC_005262.1 + 61148 0.67 0.633648
Target:  5'- uGGCGCAgcAGAUcGCGGCggcgggCGAGcugacGGGCg -3'
miRNA:   3'- gUCGCGU--UCUA-CGUCGa-----GCUCc----UCCG- -5'
23883 5' -56 NC_005262.1 + 54402 0.67 0.622683
Target:  5'- -cGgGCAAcgucGUGCgcaAGCUCGcGGAGGCg -3'
miRNA:   3'- guCgCGUUc---UACG---UCGAGCuCCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.