miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23883 5' -56 NC_005262.1 + 56087 1.12 0.000565
Target:  5'- uCAGCGCAAGAUGCAGCUCGAGGAGGCg -3'
miRNA:   3'- -GUCGCGUUCUACGUCGAGCUCCUCCG- -5'
23883 5' -56 NC_005262.1 + 36180 0.75 0.219151
Target:  5'- aGGCGCGAG-UGCAGCUCGAc--GGCc -3'
miRNA:   3'- gUCGCGUUCuACGUCGAGCUccuCCG- -5'
23883 5' -56 NC_005262.1 + 50429 0.75 0.224974
Target:  5'- aGGCGCAGGAUuccgugcuggcGCAGCgcuUCGAGaGGGGUg -3'
miRNA:   3'- gUCGCGUUCUA-----------CGUCG---AGCUC-CUCCG- -5'
23883 5' -56 NC_005262.1 + 55388 0.74 0.272221
Target:  5'- -cGCGCAagcAGAUcgagcgccgcaucgaGCAGCUCGAgcgccggcuGGAGGCg -3'
miRNA:   3'- guCGCGU---UCUA---------------CGUCGAGCU---------CCUCCG- -5'
23883 5' -56 NC_005262.1 + 2021 0.72 0.336755
Target:  5'- aCGGCGCugcuucGUGCuGCUCGAcGGGGCg -3'
miRNA:   3'- -GUCGCGuuc---UACGuCGAGCUcCUCCG- -5'
23883 5' -56 NC_005262.1 + 57505 0.71 0.373845
Target:  5'- gAGCGCAAGAagGCGGCgaaggcCGAGcugcugaccaucaucGAGGCg -3'
miRNA:   3'- gUCGCGUUCUa-CGUCGa-----GCUC---------------CUCCG- -5'
23883 5' -56 NC_005262.1 + 17082 0.71 0.397028
Target:  5'- aGGCGCGcccgucGAcGCGGCgggccgCGAGGAGGUc -3'
miRNA:   3'- gUCGCGUu-----CUaCGUCGa-----GCUCCUCCG- -5'
23883 5' -56 NC_005262.1 + 36607 0.71 0.406187
Target:  5'- uCGGCGCAaaggGGaAUGCGGUUCGGuugcuGGAuGGCg -3'
miRNA:   3'- -GUCGCGU----UC-UACGUCGAGCU-----CCU-CCG- -5'
23883 5' -56 NC_005262.1 + 38547 0.71 0.411746
Target:  5'- gCGGCGCAGGAgccggcguugcgcGCGGUUCGGGcGgaaGGGCa -3'
miRNA:   3'- -GUCGCGUUCUa------------CGUCGAGCUC-C---UCCG- -5'
23883 5' -56 NC_005262.1 + 44366 0.71 0.415478
Target:  5'- cCAGCGCuucAGAUGCcGCgacUGcGGGGGCa -3'
miRNA:   3'- -GUCGCGu--UCUACGuCGa--GCuCCUCCG- -5'
23883 5' -56 NC_005262.1 + 55448 0.7 0.424898
Target:  5'- gCAGCGagaagaaggaCAAGGUGCugucGUUCGAGGAgcugGGCg -3'
miRNA:   3'- -GUCGC----------GUUCUACGu---CGAGCUCCU----CCG- -5'
23883 5' -56 NC_005262.1 + 41346 0.7 0.424898
Target:  5'- aCGGCcCcGGAUgGCAGCUCGcGGAcGGCa -3'
miRNA:   3'- -GUCGcGuUCUA-CGUCGAGCuCCU-CCG- -5'
23883 5' -56 NC_005262.1 + 17552 0.7 0.453903
Target:  5'- -cGCGCGAGGcgGCAGC-CGcGGcGGCg -3'
miRNA:   3'- guCGCGUUCUa-CGUCGaGCuCCuCCG- -5'
23883 5' -56 NC_005262.1 + 45674 0.7 0.453903
Target:  5'- gAGCGCAuGGUGCcGCacuucgugcgcaUCGAGGGccGGCa -3'
miRNA:   3'- gUCGCGUuCUACGuCG------------AGCUCCU--CCG- -5'
23883 5' -56 NC_005262.1 + 41132 0.7 0.460824
Target:  5'- aCGGCGCGcucGGAcgacacguucaccgUGCAGCgcgCGcAGGAGGg -3'
miRNA:   3'- -GUCGCGU---UCU--------------ACGUCGa--GC-UCCUCCg -5'
23883 5' -56 NC_005262.1 + 16586 0.7 0.463808
Target:  5'- aGGCGCGu-GUGCuGgUCGAGGcGGCg -3'
miRNA:   3'- gUCGCGUucUACGuCgAGCUCCuCCG- -5'
23883 5' -56 NC_005262.1 + 1743 0.7 0.473825
Target:  5'- -uGUGCAGGAggcgaUGCGccGCaUCGAGGAGGa -3'
miRNA:   3'- guCGCGUUCU-----ACGU--CG-AGCUCCUCCg -5'
23883 5' -56 NC_005262.1 + 49508 0.7 0.473825
Target:  5'- gCAGCGCGAucgccGAggGCcuGCUCGAGGAGcuGCc -3'
miRNA:   3'- -GUCGCGUU-----CUa-CGu-CGAGCUCCUC--CG- -5'
23883 5' -56 NC_005262.1 + 50424 0.69 0.483949
Target:  5'- gAGCGCGAGGgccgcgUGCAcgucgucgugccGCgCGAGGAGGa -3'
miRNA:   3'- gUCGCGUUCU------ACGU------------CGaGCUCCUCCg -5'
23883 5' -56 NC_005262.1 + 34112 0.69 0.494176
Target:  5'- -uGCGCAGGAUucGCGGgUUGGGcGGGCu -3'
miRNA:   3'- guCGCGUUCUA--CGUCgAGCUCcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.