miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23883 5' -56 NC_005262.1 + 8256 0.67 0.622683
Target:  5'- gAGCGCGcGAaaGCAGCggcCGAGGAaGCu -3'
miRNA:   3'- gUCGCGUuCUa-CGUCGa--GCUCCUcCG- -5'
23883 5' -56 NC_005262.1 + 15915 0.69 0.514917
Target:  5'- uGGCGCcgcGAUGCGccGCagagCGAGGAGGa -3'
miRNA:   3'- gUCGCGuu-CUACGU--CGa---GCUCCUCCg -5'
23883 5' -56 NC_005262.1 + 15598 0.69 0.52542
Target:  5'- -cGCGCGAGGagcgcgUGCGGCagGAGcgcaucGAGGCg -3'
miRNA:   3'- guCGCGUUCU------ACGUCGagCUC------CUCCG- -5'
23883 5' -56 NC_005262.1 + 50770 0.68 0.556306
Target:  5'- -cGgGCAAGGUGCGGUUCGAgaucaagccgaaGGucgccgaGGGCa -3'
miRNA:   3'- guCgCGUUCUACGUCGAGCU------------CC-------UCCG- -5'
23883 5' -56 NC_005262.1 + 21517 0.68 0.568164
Target:  5'- gAGCGCGAGuacacggaagcgGUGCAGCUCGcGGuccugaaGCa -3'
miRNA:   3'- gUCGCGUUC------------UACGUCGAGCuCCuc-----CG- -5'
23883 5' -56 NC_005262.1 + 10828 0.68 0.578997
Target:  5'- cCAGCGCA---UGCGcguccgccgcGCUC-AGGGGGCg -3'
miRNA:   3'- -GUCGCGUucuACGU----------CGAGcUCCUCCG- -5'
23883 5' -56 NC_005262.1 + 38495 0.68 0.578997
Target:  5'- aAGuCGUgAAGGUGUGGCUCuccGGGGGCa -3'
miRNA:   3'- gUC-GCG-UUCUACGUCGAGcu-CCUCCG- -5'
23883 5' -56 NC_005262.1 + 12337 0.67 0.600787
Target:  5'- gCAGCGCGcGGcgGCAGCaUUGaAGGAauacGGCc -3'
miRNA:   3'- -GUCGCGU-UCuaCGUCG-AGC-UCCU----CCG- -5'
23883 5' -56 NC_005262.1 + 30885 0.67 0.600787
Target:  5'- gAGCgGCcGGAUGguGacgccgcucgcgCUCGAGGAuGGCa -3'
miRNA:   3'- gUCG-CGuUCUACguC------------GAGCUCCU-CCG- -5'
23883 5' -56 NC_005262.1 + 50424 0.69 0.483949
Target:  5'- gAGCGCGAGGgccgcgUGCAcgucgucgugccGCgCGAGGAGGa -3'
miRNA:   3'- gUCGCGUUCU------ACGU------------CGaGCUCCUCCg -5'
23883 5' -56 NC_005262.1 + 49508 0.7 0.473825
Target:  5'- gCAGCGCGAucgccGAggGCcuGCUCGAGGAGcuGCc -3'
miRNA:   3'- -GUCGCGUU-----CUa-CGu-CGAGCUCCUC--CG- -5'
23883 5' -56 NC_005262.1 + 16586 0.7 0.463808
Target:  5'- aGGCGCGu-GUGCuGgUCGAGGcGGCg -3'
miRNA:   3'- gUCGCGUucUACGuCgAGCUCCuCCG- -5'
23883 5' -56 NC_005262.1 + 2021 0.72 0.336755
Target:  5'- aCGGCGCugcuucGUGCuGCUCGAcGGGGCg -3'
miRNA:   3'- -GUCGCGuuc---UACGuCGAGCUcCUCCG- -5'
23883 5' -56 NC_005262.1 + 17082 0.71 0.397028
Target:  5'- aGGCGCGcccgucGAcGCGGCgggccgCGAGGAGGUc -3'
miRNA:   3'- gUCGCGUu-----CUaCGUCGa-----GCUCCUCCG- -5'
23883 5' -56 NC_005262.1 + 36607 0.71 0.406187
Target:  5'- uCGGCGCAaaggGGaAUGCGGUUCGGuugcuGGAuGGCg -3'
miRNA:   3'- -GUCGCGU----UC-UACGUCGAGCU-----CCU-CCG- -5'
23883 5' -56 NC_005262.1 + 55448 0.7 0.424898
Target:  5'- gCAGCGagaagaaggaCAAGGUGCugucGUUCGAGGAgcugGGCg -3'
miRNA:   3'- -GUCGC----------GUUCUACGu---CGAGCUCCU----CCG- -5'
23883 5' -56 NC_005262.1 + 41346 0.7 0.424898
Target:  5'- aCGGCcCcGGAUgGCAGCUCGcGGAcGGCa -3'
miRNA:   3'- -GUCGcGuUCUA-CGUCGAGCuCCU-CCG- -5'
23883 5' -56 NC_005262.1 + 17552 0.7 0.453903
Target:  5'- -cGCGCGAGGcgGCAGC-CGcGGcGGCg -3'
miRNA:   3'- guCGCGUUCUa-CGUCGaGCuCCuCCG- -5'
23883 5' -56 NC_005262.1 + 45674 0.7 0.453903
Target:  5'- gAGCGCAuGGUGCcGCacuucgugcgcaUCGAGGGccGGCa -3'
miRNA:   3'- gUCGCGUuCUACGuCG------------AGCUCCU--CCG- -5'
23883 5' -56 NC_005262.1 + 41132 0.7 0.460824
Target:  5'- aCGGCGCGcucGGAcgacacguucaccgUGCAGCgcgCGcAGGAGGg -3'
miRNA:   3'- -GUCGCGU---UCU--------------ACGUCGa--GC-UCCUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.