miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23884 3' -55.5 NC_005262.1 + 42571 0.66 0.728971
Target:  5'- ---cGCUUCCCuCGCUCGaaUGGAACg -3'
miRNA:   3'- cuaaCGAGGGGuGCGAGUggGUCUUG- -5'
23884 3' -55.5 NC_005262.1 + 19191 0.66 0.696784
Target:  5'- ---gGCUUCUCGCGCUCGagCGGAAUc -3'
miRNA:   3'- cuaaCGAGGGGUGCGAGUggGUCUUG- -5'
23884 3' -55.5 NC_005262.1 + 59380 0.66 0.696784
Target:  5'- ---aGCUCCagGCGCUCGCgCAGcaGGCg -3'
miRNA:   3'- cuaaCGAGGggUGCGAGUGgGUC--UUG- -5'
23884 3' -55.5 NC_005262.1 + 50018 0.67 0.65304
Target:  5'- -----aUUCCCGCGCUCAUCCgAGAGg -3'
miRNA:   3'- cuaacgAGGGGUGCGAGUGGG-UCUUg -5'
23884 3' -55.5 NC_005262.1 + 39023 0.67 0.642029
Target:  5'- --gUGCUCgCCCG-GCUCGCCgCGGuGCu -3'
miRNA:   3'- cuaACGAG-GGGUgCGAGUGG-GUCuUG- -5'
23884 3' -55.5 NC_005262.1 + 56017 0.67 0.642029
Target:  5'- ---aGCUCUCCAUgcgcggGCUCGCgCAGAAg -3'
miRNA:   3'- cuaaCGAGGGGUG------CGAGUGgGUCUUg -5'
23884 3' -55.5 NC_005262.1 + 1950 0.67 0.631009
Target:  5'- aAUU-CUCCCCAUGCUUAuCCCGGcagauGCg -3'
miRNA:   3'- cUAAcGAGGGGUGCGAGU-GGGUCu----UG- -5'
23884 3' -55.5 NC_005262.1 + 17431 0.68 0.597993
Target:  5'- uGAUUGCgUCCUCGCGUUCAgCCuucGCa -3'
miRNA:   3'- -CUAACG-AGGGGUGCGAGUgGGucuUG- -5'
23884 3' -55.5 NC_005262.1 + 47781 0.69 0.543658
Target:  5'- ---gGCUCCCCGUGCUCGauaCCAaGACa -3'
miRNA:   3'- cuaaCGAGGGGUGCGAGUg--GGUcUUG- -5'
23884 3' -55.5 NC_005262.1 + 9843 0.69 0.522354
Target:  5'- cGAcUGUUCCCaCGCGC-CAUCCGuGAGCu -3'
miRNA:   3'- -CUaACGAGGG-GUGCGaGUGGGU-CUUG- -5'
23884 3' -55.5 NC_005262.1 + 18764 0.7 0.460613
Target:  5'- gGGUUGaUCCCCAUGCUCGCCaucuGCc -3'
miRNA:   3'- -CUAACgAGGGGUGCGAGUGGgucuUG- -5'
23884 3' -55.5 NC_005262.1 + 46818 0.72 0.367143
Target:  5'- --gUGCaggCCCgCGCGCUCGCCgAGAAa -3'
miRNA:   3'- cuaACGa--GGG-GUGCGAGUGGgUCUUg -5'
23884 3' -55.5 NC_005262.1 + 45153 0.74 0.280403
Target:  5'- ---cGCUgCUCACGUcCACCCGGAACu -3'
miRNA:   3'- cuaaCGAgGGGUGCGaGUGGGUCUUG- -5'
23884 3' -55.5 NC_005262.1 + 4244 0.75 0.253158
Target:  5'- --gUGCUCCUCGCGCUCcucgugGCCCAuuGCg -3'
miRNA:   3'- cuaACGAGGGGUGCGAG------UGGGUcuUG- -5'
23884 3' -55.5 NC_005262.1 + 55734 1.1 0.000847
Target:  5'- uGAUUGCUCCCCACGCUCACCCAGAACg -3'
miRNA:   3'- -CUAACGAGGGGUGCGAGUGGGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.