Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23884 | 3' | -55.5 | NC_005262.1 | + | 59380 | 0.66 | 0.696784 |
Target: 5'- ---aGCUCCagGCGCUCGCgCAGcaGGCg -3' miRNA: 3'- cuaaCGAGGggUGCGAGUGgGUC--UUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 56017 | 0.67 | 0.642029 |
Target: 5'- ---aGCUCUCCAUgcgcggGCUCGCgCAGAAg -3' miRNA: 3'- cuaaCGAGGGGUG------CGAGUGgGUCUUg -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 55734 | 1.1 | 0.000847 |
Target: 5'- uGAUUGCUCCCCACGCUCACCCAGAACg -3' miRNA: 3'- -CUAACGAGGGGUGCGAGUGGGUCUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 50018 | 0.67 | 0.65304 |
Target: 5'- -----aUUCCCGCGCUCAUCCgAGAGg -3' miRNA: 3'- cuaacgAGGGGUGCGAGUGGG-UCUUg -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 47781 | 0.69 | 0.543658 |
Target: 5'- ---gGCUCCCCGUGCUCGauaCCAaGACa -3' miRNA: 3'- cuaaCGAGGGGUGCGAGUg--GGUcUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 46818 | 0.72 | 0.367143 |
Target: 5'- --gUGCaggCCCgCGCGCUCGCCgAGAAa -3' miRNA: 3'- cuaACGa--GGG-GUGCGAGUGGgUCUUg -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 45153 | 0.74 | 0.280403 |
Target: 5'- ---cGCUgCUCACGUcCACCCGGAACu -3' miRNA: 3'- cuaaCGAgGGGUGCGaGUGGGUCUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 42571 | 0.66 | 0.728971 |
Target: 5'- ---cGCUUCCCuCGCUCGaaUGGAACg -3' miRNA: 3'- cuaaCGAGGGGuGCGAGUggGUCUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 39023 | 0.67 | 0.642029 |
Target: 5'- --gUGCUCgCCCG-GCUCGCCgCGGuGCu -3' miRNA: 3'- cuaACGAG-GGGUgCGAGUGG-GUCuUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 19191 | 0.66 | 0.696784 |
Target: 5'- ---gGCUUCUCGCGCUCGagCGGAAUc -3' miRNA: 3'- cuaaCGAGGGGUGCGAGUggGUCUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 18764 | 0.7 | 0.460613 |
Target: 5'- gGGUUGaUCCCCAUGCUCGCCaucuGCc -3' miRNA: 3'- -CUAACgAGGGGUGCGAGUGGgucuUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 17431 | 0.68 | 0.597993 |
Target: 5'- uGAUUGCgUCCUCGCGUUCAgCCuucGCa -3' miRNA: 3'- -CUAACG-AGGGGUGCGAGUgGGucuUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 9843 | 0.69 | 0.522354 |
Target: 5'- cGAcUGUUCCCaCGCGC-CAUCCGuGAGCu -3' miRNA: 3'- -CUaACGAGGG-GUGCGaGUGGGU-CUUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 4244 | 0.75 | 0.253158 |
Target: 5'- --gUGCUCCUCGCGCUCcucgugGCCCAuuGCg -3' miRNA: 3'- cuaACGAGGGGUGCGAG------UGGGUcuUG- -5' |
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23884 | 3' | -55.5 | NC_005262.1 | + | 1950 | 0.67 | 0.631009 |
Target: 5'- aAUU-CUCCCCAUGCUUAuCCCGGcagauGCg -3' miRNA: 3'- cUAAcGAGGGGUGCGAGU-GGGUCu----UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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