Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 41590 | 0.67 | 0.586433 |
|
Target: 5'- aGCuugUCGAgcgcGAGCCCGGCGuucucGGCuUCCAg -3' miRNA: 3'- -UGca-AGCU----UUCGGGCCGC-----UCGcAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 27069 | 0.68 | 0.533619 |
|
Target: 5'- cGCGUUCGugcgcGAGCUCGGCGA-CaUCCGc -3' miRNA: 3'- -UGCAAGCu----UUCGGGCCGCUcGcAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 29778 | 0.69 | 0.502741 |
|
Target: 5'- gGCGcaCGAugcGGCCCGGCGucacGCcGUCCGc -3' miRNA: 3'- -UGCaaGCUu--UCGGGCCGCu---CG-CAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 59798 | 0.69 | 0.502741 |
|
Target: 5'- cGCGUuccUCGAGGGCaCCGGCccgcaGGCGgCCAc -3' miRNA: 3'- -UGCA---AGCUUUCG-GGCCGc----UCGCaGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 58376 | 0.7 | 0.44353 |
|
Target: 5'- ---aUCGaAAAGaCCCGGCucGCGUCCAa -3' miRNA: 3'- ugcaAGC-UUUC-GGGCCGcuCGCAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 42323 | 0.7 | 0.44353 |
|
Target: 5'- cACGUUCGugaccGGGUUCGGCGAGgaauccgaacCGUCCGc -3' miRNA: 3'- -UGCAAGCu----UUCGGGCCGCUC----------GCAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 45400 | 0.7 | 0.424675 |
|
Target: 5'- gGCGcUCGGAAGCCgGuGCGGGuCGUgCAa -3' miRNA: 3'- -UGCaAGCUUUCGGgC-CGCUC-GCAgGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 7136 | 0.73 | 0.278522 |
|
Target: 5'- cUGUUCGAugaagcGAGCCUuGCGGGCGUUCAu -3' miRNA: 3'- uGCAAGCU------UUCGGGcCGCUCGCAGGU- -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 30866 | 0.74 | 0.24574 |
|
Target: 5'- aGCGaucgUGAAGGCgCUGGCGAGCGUCg- -3' miRNA: 3'- -UGCaa--GCUUUCG-GGCCGCUCGCAGgu -5' |
|||||||
| 23885 | 3' | -56.8 | NC_005262.1 | + | 54964 | 1.08 | 0.001117 |
|
Target: 5'- cACGUUCGAAAGCCCGGCGAGCGUCCAc -3' miRNA: 3'- -UGCAAGCUUUCGGGCCGCUCGCAGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home