Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23885 | 5' | -55.6 | NC_005262.1 | + | 1899 | 0.72 | 0.385766 |
Target: 5'- -cCGUGCcuUCGAGCGGGGCggagggUGCGGg -3' miRNA: 3'- caGCAUGu-AGCUCGCCCUGa-----GCGCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 5897 | 0.66 | 0.736616 |
Target: 5'- cGUCG-AUGUCGGGCGGGAg-CGCc-- -3' miRNA: 3'- -CAGCaUGUAGCUCGCCCUgaGCGcua -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 10882 | 0.69 | 0.521841 |
Target: 5'- cGUCGUAgAUCGAGCGGaucacgccCUCGCuGGUg -3' miRNA: 3'- -CAGCAUgUAGCUCGCCcu------GAGCG-CUA- -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 17173 | 0.66 | 0.74697 |
Target: 5'- -gCGUgcccuucaucGCGUCGGGCGGGAUcUGUGGc -3' miRNA: 3'- caGCA----------UGUAGCUCGCCCUGaGCGCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 31887 | 0.67 | 0.683523 |
Target: 5'- -aCGUccggcGCGUCGAGCGGGuuGCcCGCGu- -3' miRNA: 3'- caGCA-----UGUAGCUCGCCC--UGaGCGCua -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 33990 | 0.71 | 0.46081 |
Target: 5'- cGUCGUGCGUaacaUGGGCGcGGACggCGUGAc -3' miRNA: 3'- -CAGCAUGUA----GCUCGC-CCUGa-GCGCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 35675 | 0.66 | 0.756192 |
Target: 5'- cUCGUgcucACGUCGAGCGGGcacggaagcauccGCUC-CGGc -3' miRNA: 3'- cAGCA----UGUAGCUCGCCC-------------UGAGcGCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 38323 | 0.67 | 0.694281 |
Target: 5'- uUCGUGCAguuggCGAGCGGcaucgcCUCGCGc- -3' miRNA: 3'- cAGCAUGUa----GCUCGCCcu----GAGCGCua -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 42852 | 0.66 | 0.75721 |
Target: 5'- -cCGUGCAUCaacgcGCGcGGGCUCGuCGAc -3' miRNA: 3'- caGCAUGUAGcu---CGC-CCUGAGC-GCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 46766 | 0.68 | 0.585755 |
Target: 5'- gGUCGUACA---GGCGGcGACgCGCGGUa -3' miRNA: 3'- -CAGCAUGUagcUCGCC-CUGaGCGCUA- -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 55003 | 1.05 | 0.00222 |
Target: 5'- uGUCGUACAUCGAGCGGGACUCGCGAUc -3' miRNA: 3'- -CAGCAUGUAGCUCGCCCUGAGCGCUA- -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 57293 | 0.67 | 0.683523 |
Target: 5'- gGUCGgcgcgcugauCGUCGAGCGGG--UUGCGAa -3' miRNA: 3'- -CAGCau--------GUAGCUCGCCCugAGCGCUa -5' |
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23885 | 5' | -55.6 | NC_005262.1 | + | 58637 | 0.66 | 0.74697 |
Target: 5'- cUCGgcaGUCGAGCGgccGGGCgCGCGAg -3' miRNA: 3'- cAGCaugUAGCUCGC---CCUGaGCGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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