miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23886 3' -53.3 NC_005262.1 + 54862 1.12 0.001264
Target:  5'- cCGCGCGAGGGUCAAAUAAUCGGGCGCu -3'
miRNA:   3'- -GCGCGCUCCCAGUUUAUUAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 52335 0.77 0.283431
Target:  5'- gCGCGCGAGcgcGGUaggcacGAUGcgCGGGCGCg -3'
miRNA:   3'- -GCGCGCUC---CCAgu----UUAUuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 13449 0.74 0.406187
Target:  5'- cCGCGUGaAGGGUCGcaa----GGGCGCg -3'
miRNA:   3'- -GCGCGC-UCCCAGUuuauuagCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 30733 0.74 0.424898
Target:  5'- gGCGaGAGGGUCGAgggcccgcuuaGUAcgacGUCGGGCGg -3'
miRNA:   3'- gCGCgCUCCCAGUU-----------UAU----UAGCCCGCg -5'
23886 3' -53.3 NC_005262.1 + 61291 0.74 0.444113
Target:  5'- gGCGCGgccagccucgcGGGGUCGGAUA--UGGGCaGCa -3'
miRNA:   3'- gCGCGC-----------UCCCAGUUUAUuaGCCCG-CG- -5'
23886 3' -53.3 NC_005262.1 + 28932 0.73 0.483949
Target:  5'- gCGCGCcccacagauGAGGGUCAuGUGcUCGcGCGCg -3'
miRNA:   3'- -GCGCG---------CUCCCAGUuUAUuAGCcCGCG- -5'
23886 3' -53.3 NC_005262.1 + 14024 0.73 0.494176
Target:  5'- gGCGCGgcAGcGGcCGGAgccUCGGGCGCg -3'
miRNA:   3'- gCGCGC--UC-CCaGUUUauuAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 13508 0.72 0.503464
Target:  5'- cCGCGCGGccgucacGGGcUCGGccgGcgCGGGCGCg -3'
miRNA:   3'- -GCGCGCU-------CCC-AGUUua-UuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 45650 0.72 0.5045
Target:  5'- aCGCGCGAGcucGUCGAAcaGAUCGaGCGCa -3'
miRNA:   3'- -GCGCGCUCc--CAGUUUa-UUAGCcCGCG- -5'
23886 3' -53.3 NC_005262.1 + 58793 0.72 0.514917
Target:  5'- gGCGCu-GGGUCGAcgacGUGAUC-GGCGCc -3'
miRNA:   3'- gCGCGcuCCCAGUU----UAUUAGcCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 56431 0.72 0.536003
Target:  5'- uGCGCGAGGG-CAAAaagcgcgugcUGAUCGGcG-GCa -3'
miRNA:   3'- gCGCGCUCCCaGUUU----------AUUAGCC-CgCG- -5'
23886 3' -53.3 NC_005262.1 + 23814 0.71 0.568164
Target:  5'- uGUGCGAGGGguuGGUcAUCucauGGGCGCc -3'
miRNA:   3'- gCGCGCUCCCaguUUAuUAG----CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 2404 0.71 0.589874
Target:  5'- gCGCGCGA-GGUCGuAGUAG-CGGcuGCGCa -3'
miRNA:   3'- -GCGCGCUcCCAGU-UUAUUaGCC--CGCG- -5'
23886 3' -53.3 NC_005262.1 + 41288 0.71 0.589874
Target:  5'- cCGCGCGuGGGcgacaUCAAGguauggCGcGGCGCg -3'
miRNA:   3'- -GCGCGCuCCC-----AGUUUauua--GC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 61160 0.7 0.622683
Target:  5'- uCGCgGCGGcGGG-CGAGcUGA-CGGGCGCg -3'
miRNA:   3'- -GCG-CGCU-CCCaGUUU-AUUaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 60083 0.7 0.633648
Target:  5'- gCGCGCGAcgcgcugacGGGcacgaUCAAcAUGGUCGGGCa- -3'
miRNA:   3'- -GCGCGCU---------CCC-----AGUU-UAUUAGCCCGcg -5'
23886 3' -53.3 NC_005262.1 + 15597 0.7 0.633648
Target:  5'- gCGCGCGAGGaG-CGcGUGcggcaggagcgcAUCGaGGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUuUAU------------UAGC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 10846 0.7 0.633648
Target:  5'- cCGCGCucaGGGGG-CGGcAUGAgugaGGGCGCg -3'
miRNA:   3'- -GCGCG---CUCCCaGUU-UAUUag--CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 19099 0.7 0.655563
Target:  5'- uCGCGCGcGGcgaugccacGUUcg--GAUCGGGCGCg -3'
miRNA:   3'- -GCGCGCuCC---------CAGuuuaUUAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 17551 0.7 0.666494
Target:  5'- gCGCGCGAGGcGgCAGccgcggCGGcGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUUuauua-GCC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.