miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23886 3' -53.3 NC_005262.1 + 19788 0.69 0.720453
Target:  5'- uGCGCGu-GGUCGucgcacAUCGGGCGg -3'
miRNA:   3'- gCGCGCucCCAGUuuau--UAGCCCGCg -5'
23886 3' -53.3 NC_005262.1 + 17343 0.69 0.70979
Target:  5'- gGCGCGGcauucGGGUCcg--GcgCGGGCGg -3'
miRNA:   3'- gCGCGCU-----CCCAGuuuaUuaGCCCGCg -5'
23886 3' -53.3 NC_005262.1 + 36534 0.69 0.699052
Target:  5'- gGCGCGGcgacuGGGauu----AUCGGGCGCa -3'
miRNA:   3'- gCGCGCU-----CCCaguuuauUAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 50425 0.69 0.699052
Target:  5'- aGCGCGAGGGcCGcGUGcacgucGUCGugccGCGCg -3'
miRNA:   3'- gCGCGCUCCCaGUuUAU------UAGCc---CGCG- -5'
23886 3' -53.3 NC_005262.1 + 56956 0.69 0.699052
Target:  5'- cCGCGC--GGG-CGAGUucgCGGGCGUg -3'
miRNA:   3'- -GCGCGcuCCCaGUUUAuuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 34979 0.69 0.699052
Target:  5'- aGCGCGAcGcGaGcUCgAGAUGcgCGGGCGCg -3'
miRNA:   3'- gCGCGCU-C-C-C-AG-UUUAUuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 34122 0.69 0.688249
Target:  5'- uCGCGgGuuGGG-CGGGcUGcgCGGGCGCg -3'
miRNA:   3'- -GCGCgCu-CCCaGUUU-AUuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 43992 0.69 0.677393
Target:  5'- uCGCGCGGGcgauGGUCGcuUAAUCGugucccgaguGGUGCg -3'
miRNA:   3'- -GCGCGCUC----CCAGUuuAUUAGC----------CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 36753 0.69 0.675216
Target:  5'- aGCGCGuGaGGUCGAuggcggggCGGGCuGCu -3'
miRNA:   3'- gCGCGCuC-CCAGUUuauua---GCCCG-CG- -5'
23886 3' -53.3 NC_005262.1 + 17551 0.7 0.666494
Target:  5'- gCGCGCGAGGcGgCAGccgcggCGGcGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUUuauua-GCC-CGCG- -5'
23886 3' -53.3 NC_005262.1 + 57003 0.7 0.666494
Target:  5'- aGCGCGA----CGAGUucUCGGGCGCg -3'
miRNA:   3'- gCGCGCUcccaGUUUAuuAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 19099 0.7 0.655563
Target:  5'- uCGCGCGcGGcgaugccacGUUcg--GAUCGGGCGCg -3'
miRNA:   3'- -GCGCGCuCC---------CAGuuuaUUAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 60083 0.7 0.633648
Target:  5'- gCGCGCGAcgcgcugacGGGcacgaUCAAcAUGGUCGGGCa- -3'
miRNA:   3'- -GCGCGCU---------CCC-----AGUU-UAUUAGCCCGcg -5'
23886 3' -53.3 NC_005262.1 + 10846 0.7 0.633648
Target:  5'- cCGCGCucaGGGGG-CGGcAUGAgugaGGGCGCg -3'
miRNA:   3'- -GCGCG---CUCCCaGUU-UAUUag--CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 15597 0.7 0.633648
Target:  5'- gCGCGCGAGGaG-CGcGUGcggcaggagcgcAUCGaGGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUuUAU------------UAGC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 61160 0.7 0.622683
Target:  5'- uCGCgGCGGcGGG-CGAGcUGA-CGGGCGCg -3'
miRNA:   3'- -GCG-CGCU-CCCaGUUU-AUUaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 2404 0.71 0.589874
Target:  5'- gCGCGCGA-GGUCGuAGUAG-CGGcuGCGCa -3'
miRNA:   3'- -GCGCGCUcCCAGU-UUAUUaGCC--CGCG- -5'
23886 3' -53.3 NC_005262.1 + 41288 0.71 0.589874
Target:  5'- cCGCGCGuGGGcgacaUCAAGguauggCGcGGCGCg -3'
miRNA:   3'- -GCGCGCuCCC-----AGUUUauua--GC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 23814 0.71 0.568164
Target:  5'- uGUGCGAGGGguuGGUcAUCucauGGGCGCc -3'
miRNA:   3'- gCGCGCUCCCaguUUAuUAG----CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 56431 0.72 0.536003
Target:  5'- uGCGCGAGGG-CAAAaagcgcgugcUGAUCGGcG-GCa -3'
miRNA:   3'- gCGCGCUCCCaGUUU----------AUUAGCC-CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.