miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23886 3' -53.3 NC_005262.1 + 2404 0.71 0.589874
Target:  5'- gCGCGCGA-GGUCGuAGUAG-CGGcuGCGCa -3'
miRNA:   3'- -GCGCGCUcCCAGU-UUAUUaGCC--CGCG- -5'
23886 3' -53.3 NC_005262.1 + 8892 0.67 0.829527
Target:  5'- gGUGCGAGccGUCGAAcuggCGcGGCGCg -3'
miRNA:   3'- gCGCGCUCc-CAGUUUauuaGC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 9681 0.67 0.820435
Target:  5'- --gGCGAGGGcgccgUCGAc--GUCGaGGCGCa -3'
miRNA:   3'- gcgCGCUCCC-----AGUUuauUAGC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 10846 0.7 0.633648
Target:  5'- cCGCGCucaGGGGG-CGGcAUGAgugaGGGCGCg -3'
miRNA:   3'- -GCGCG---CUCCCaGUU-UAUUag--CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 13449 0.74 0.406187
Target:  5'- cCGCGUGaAGGGUCGcaa----GGGCGCg -3'
miRNA:   3'- -GCGCGC-UCCCAGUuuauuagCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 13508 0.72 0.503464
Target:  5'- cCGCGCGGccgucacGGGcUCGGccgGcgCGGGCGCg -3'
miRNA:   3'- -GCGCGCU-------CCC-AGUUua-UuaGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 13707 0.66 0.855529
Target:  5'- uCGCGCGGcgcGGGUUc---GGUCGG-CGCa -3'
miRNA:   3'- -GCGCGCU---CCCAGuuuaUUAGCCcGCG- -5'
23886 3' -53.3 NC_005262.1 + 14024 0.73 0.494176
Target:  5'- gGCGCGgcAGcGGcCGGAgccUCGGGCGCg -3'
miRNA:   3'- gCGCGC--UC-CCaGUUUauuAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 15597 0.7 0.633648
Target:  5'- gCGCGCGAGGaG-CGcGUGcggcaggagcgcAUCGaGGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUuUAU------------UAGC-CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 15833 0.68 0.77923
Target:  5'- gGCGCGAGaGGUCGuucgcgccuucGGUGaacaaaucuucgauGUCGccGGCGCu -3'
miRNA:   3'- gCGCGCUC-CCAGU-----------UUAU--------------UAGC--CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 17343 0.69 0.70979
Target:  5'- gGCGCGGcauucGGGUCcg--GcgCGGGCGg -3'
miRNA:   3'- gCGCGCU-----CCCAGuuuaUuaGCCCGCg -5'
23886 3' -53.3 NC_005262.1 + 17551 0.7 0.666494
Target:  5'- gCGCGCGAGGcGgCAGccgcggCGGcGCGCg -3'
miRNA:   3'- -GCGCGCUCC-CaGUUuauua-GCC-CGCG- -5'
23886 3' -53.3 NC_005262.1 + 19099 0.7 0.655563
Target:  5'- uCGCGCGcGGcgaugccacGUUcg--GAUCGGGCGCg -3'
miRNA:   3'- -GCGCGCuCC---------CAGuuuaUUAGCCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 19788 0.69 0.720453
Target:  5'- uGCGCGu-GGUCGucgcacAUCGGGCGg -3'
miRNA:   3'- gCGCGCucCCAGUuuau--UAGCCCGCg -5'
23886 3' -53.3 NC_005262.1 + 21189 0.66 0.863744
Target:  5'- gGCaGCGAGauaaggccGGUCAGGUcGUCcggcGGCGCg -3'
miRNA:   3'- gCG-CGCUC--------CCAGUUUAuUAGc---CCGCG- -5'
23886 3' -53.3 NC_005262.1 + 21822 0.67 0.820435
Target:  5'- uGCGCGGcGGuGUCAGGcAA-CaGGCGCg -3'
miRNA:   3'- gCGCGCU-CC-CAGUUUaUUaGcCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 23108 0.67 0.829527
Target:  5'- cCGUGCGAguguccaGGGUCGuAgacgcuaugcgcgugGGUCGGGuCGCu -3'
miRNA:   3'- -GCGCGCU-------CCCAGUuUa--------------UUAGCCC-GCG- -5'
23886 3' -53.3 NC_005262.1 + 23669 0.68 0.751874
Target:  5'- aGCGCGAGcGUCGuacuuUCGGGaucaaGCg -3'
miRNA:   3'- gCGCGCUCcCAGUuuauuAGCCCg----CG- -5'
23886 3' -53.3 NC_005262.1 + 23814 0.71 0.568164
Target:  5'- uGUGCGAGGGguuGGUcAUCucauGGGCGCc -3'
miRNA:   3'- gCGCGCUCCCaguUUAuUAG----CCCGCG- -5'
23886 3' -53.3 NC_005262.1 + 23849 0.66 0.862933
Target:  5'- aGCGCaaggagaGAGGGagGAAUcccgCGcGGCGCa -3'
miRNA:   3'- gCGCG-------CUCCCagUUUAuua-GC-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.