miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23886 5' -57.4 NC_005262.1 + 28419 0.66 0.691256
Target:  5'- aCGUGCUCGAGGucgaauCGGGCCGcgcCGUGCu -3'
miRNA:   3'- cGCGUGGGUUCUc-----GCCUGGCa--GCACG- -5'
23886 5' -57.4 NC_005262.1 + 12937 0.66 0.691256
Target:  5'- gGCGCGCUgAAGGGCGuGCgCGaCG-GCa -3'
miRNA:   3'- -CGCGUGGgUUCUCGCcUG-GCaGCaCG- -5'
23886 5' -57.4 NC_005262.1 + 23073 0.66 0.691256
Target:  5'- cCGUGCUCGAGGGCGucagcgccGCCGUauuauggcCGUGCg -3'
miRNA:   3'- cGCGUGGGUUCUCGCc-------UGGCA--------GCACG- -5'
23886 5' -57.4 NC_005262.1 + 51005 0.66 0.690206
Target:  5'- cGCGcCGCCCAAugcucacGGGCGuuuaGGCCGUUGUucguauGCa -3'
miRNA:   3'- -CGC-GUGGGUU-------CUCGC----CUGGCAGCA------CG- -5'
23886 5' -57.4 NC_005262.1 + 39945 0.66 0.680731
Target:  5'- gGCgGCACCggCAAGGGCGGcguGCCGgccuaCGUuGCc -3'
miRNA:   3'- -CG-CGUGG--GUUCUCGCC---UGGCa----GCA-CG- -5'
23886 5' -57.4 NC_005262.1 + 6472 0.66 0.680731
Target:  5'- gGCGCGCCC-AGA-CGGuuGCCGaucugcUCGaUGCg -3'
miRNA:   3'- -CGCGUGGGuUCUcGCC--UGGC------AGC-ACG- -5'
23886 5' -57.4 NC_005262.1 + 8994 0.66 0.679676
Target:  5'- cGCGCAUaaaucggCCGcaugauAGGGCGGAcgcacgaacCCGUaaCGUGCa -3'
miRNA:   3'- -CGCGUG-------GGU------UCUCGCCU---------GGCA--GCACG- -5'
23886 5' -57.4 NC_005262.1 + 33296 0.66 0.676509
Target:  5'- cGCGCACgCCGGgcgccgaagccgucGAGuCGGACgcaacugCGUCGcUGCg -3'
miRNA:   3'- -CGCGUG-GGUU--------------CUC-GCCUG-------GCAGC-ACG- -5'
23886 5' -57.4 NC_005262.1 + 58653 0.66 0.670163
Target:  5'- aGCGCGCC---GAGCaGGAucagcgccgcCCGUCGcGCa -3'
miRNA:   3'- -CGCGUGGguuCUCG-CCU----------GGCAGCaCG- -5'
23886 5' -57.4 NC_005262.1 + 50824 0.66 0.670163
Target:  5'- uCGCGCCgGAGA-CGGGCaCGcUCG-GCa -3'
miRNA:   3'- cGCGUGGgUUCUcGCCUG-GC-AGCaCG- -5'
23886 5' -57.4 NC_005262.1 + 63597 0.66 0.659561
Target:  5'- uGCGCGCgCu---GCGGAUCGUCaccgGCa -3'
miRNA:   3'- -CGCGUGgGuucuCGCCUGGCAGca--CG- -5'
23886 5' -57.4 NC_005262.1 + 13975 0.66 0.659561
Target:  5'- cGCGCGCuCCAuc-GCGcGGCCGaUCGgGCc -3'
miRNA:   3'- -CGCGUG-GGUucuCGC-CUGGC-AGCaCG- -5'
23886 5' -57.4 NC_005262.1 + 37761 0.66 0.659561
Target:  5'- uGCGCGCCgCGGcGAGCugcuGGGCguaGUaCGUGCc -3'
miRNA:   3'- -CGCGUGG-GUU-CUCG----CCUGg--CA-GCACG- -5'
23886 5' -57.4 NC_005262.1 + 37954 0.66 0.659561
Target:  5'- aCGCcaacGCCCGuGAGCGGugCcuuuaccacgGUCgGUGCa -3'
miRNA:   3'- cGCG----UGGGUuCUCGCCugG----------CAG-CACG- -5'
23886 5' -57.4 NC_005262.1 + 31263 0.66 0.659561
Target:  5'- aGC-CGCCCGAaGGCGGcCCGUcCGgucaGCg -3'
miRNA:   3'- -CGcGUGGGUUcUCGCCuGGCA-GCa---CG- -5'
23886 5' -57.4 NC_005262.1 + 27034 0.66 0.659561
Target:  5'- uCGgGCUCAcaaauGCGGAaaUCGUCGUGCg -3'
miRNA:   3'- cGCgUGGGUucu--CGCCU--GGCAGCACG- -5'
23886 5' -57.4 NC_005262.1 + 62367 0.66 0.659561
Target:  5'- cGCuGCGCUCGAcGaAGCGGccGCgGUCGUGg -3'
miRNA:   3'- -CG-CGUGGGUU-C-UCGCC--UGgCAGCACg -5'
23886 5' -57.4 NC_005262.1 + 16997 0.66 0.648936
Target:  5'- cGC-CGgCCGAGcGCGcGCuCGUCGUGCu -3'
miRNA:   3'- -CGcGUgGGUUCuCGCcUG-GCAGCACG- -5'
23886 5' -57.4 NC_005262.1 + 13024 0.66 0.648936
Target:  5'- aGCGCGCCaAGGGcuacGCGGuGCgCGUCGagcUGCg -3'
miRNA:   3'- -CGCGUGGgUUCU----CGCC-UG-GCAGC---ACG- -5'
23886 5' -57.4 NC_005262.1 + 13803 0.66 0.648936
Target:  5'- gGCGCGgCUucaucggcGGGAGCGGGCgccgcugucuCGUCG-GCg -3'
miRNA:   3'- -CGCGUgGG--------UUCUCGCCUG----------GCAGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.