miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 3' -55 NC_005262.1 + 46149 0.66 0.748544
Target:  5'- gCUGGCGGgCGAucucUGCCuGCUgcu-CGGCg -3'
miRNA:   3'- -GACCGCCgGCU----GCGG-UGAaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 3647 0.66 0.748544
Target:  5'- -cGGCGGCCGGguacuuCGCCcaugcCUUcgccGCGACg -3'
miRNA:   3'- gaCCGCCGGCU------GCGGu----GAAau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 49346 0.66 0.748544
Target:  5'- -aGGCGcgcGCCG-CGCuCGCU--GACGACu -3'
miRNA:   3'- gaCCGC---CGGCuGCG-GUGAaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 35926 0.66 0.73817
Target:  5'- uUGGCucGGCCGccuUGCCGCcguccuuGCGACg -3'
miRNA:   3'- gACCG--CCGGCu--GCGGUGaaau---UGCUG- -5'
23887 3' -55 NC_005262.1 + 13554 0.66 0.73817
Target:  5'- -cGGCGGUCGAUcucgGCCGacaccuuGCGGCg -3'
miRNA:   3'- gaCCGCCGGCUG----CGGUgaaau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 33896 0.66 0.73817
Target:  5'- gUGcGuCGGCCGGCGgCCcgauCggUAGCGGCg -3'
miRNA:   3'- gAC-C-GCCGGCUGC-GGu---GaaAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 28560 0.66 0.73817
Target:  5'- uCUGG-GGCUucCGCCGCgcgcGCGACg -3'
miRNA:   3'- -GACCgCCGGcuGCGGUGaaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 43458 0.66 0.73817
Target:  5'- uUGuGCGGaUCGAgucgaGCCGCUUcgUGGCGGCg -3'
miRNA:   3'- gAC-CGCC-GGCUg----CGGUGAA--AUUGCUG- -5'
23887 3' -55 NC_005262.1 + 48493 0.66 0.73817
Target:  5'- -gGGCGGCgCGACggcaGCCGCaggUAACaGCg -3'
miRNA:   3'- gaCCGCCG-GCUG----CGGUGaa-AUUGcUG- -5'
23887 3' -55 NC_005262.1 + 51842 0.66 0.73817
Target:  5'- gUGcGCGaagugcugaaGCgCGGCGCCGCg--AACGACg -3'
miRNA:   3'- gAC-CGC----------CG-GCUGCGGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 24833 0.66 0.73817
Target:  5'- --cGCGGCCGGCGCCG---UGcCGAUc -3'
miRNA:   3'- gacCGCCGGCUGCGGUgaaAUuGCUG- -5'
23887 3' -55 NC_005262.1 + 30884 0.66 0.737126
Target:  5'- -cGaGCGGCCggaugguGACGCCGCUcgcgcucgagGAUGGCa -3'
miRNA:   3'- gaC-CGCCGG-------CUGCGGUGAaa--------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 16059 0.66 0.736082
Target:  5'- --cGCGGCCGGCGgCGCaccagauacaGGCGGCg -3'
miRNA:   3'- gacCGCCGGCUGCgGUGaaa-------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 10158 0.66 0.735036
Target:  5'- uUGGCGaaugccgcguccauGUCGACGCCcgGCUcgggAACGACc -3'
miRNA:   3'- gACCGC--------------CGGCUGCGG--UGAaa--UUGCUG- -5'
23887 3' -55 NC_005262.1 + 5289 0.67 0.72769
Target:  5'- -gGGCGGUCGAcugguucagguuCGCCGCUaccagAugGAUc -3'
miRNA:   3'- gaCCGCCGGCU------------GCGGUGAaa---UugCUG- -5'
23887 3' -55 NC_005262.1 + 44182 0.67 0.72769
Target:  5'- gCUGGaC-GCCGAcCGCCACUcgcaccgaaGGCGACg -3'
miRNA:   3'- -GACC-GcCGGCU-GCGGUGAaa-------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 24205 0.67 0.72769
Target:  5'- -aGGCGGCagccgCGACGCUGCgc---CGGCa -3'
miRNA:   3'- gaCCGCCG-----GCUGCGGUGaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 32730 0.67 0.72769
Target:  5'- -cGGCGugcuGCCGGcCGaCCACUccgugAGCGACg -3'
miRNA:   3'- gaCCGC----CGGCU-GC-GGUGAaa---UUGCUG- -5'
23887 3' -55 NC_005262.1 + 15144 0.67 0.717116
Target:  5'- --cGCGGCCGGCGUCGagu---CGGCg -3'
miRNA:   3'- gacCGCCGGCUGCGGUgaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 15727 0.67 0.717116
Target:  5'- -gGGCGGCuCGuCGCgGCagguGCGACc -3'
miRNA:   3'- gaCCGCCG-GCuGCGgUGaaauUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.