miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 5' -57.6 NC_005262.1 + 34204 0.66 0.602097
Target:  5'- cUGCCGCccGCGAU-CGcGGCUUCGgGCg- -3'
miRNA:   3'- -ACGGCG--UGUUAcGC-CCGAAGCgUGgg -5'
23888 5' -57.6 NC_005262.1 + 23067 0.66 0.602097
Target:  5'- cGCCGC-CcGUGCucgaGGGCgUCaGCGCCg -3'
miRNA:   3'- aCGGCGuGuUACG----CCCGaAG-CGUGGg -5'
23888 5' -57.6 NC_005262.1 + 56753 0.66 0.602097
Target:  5'- cGCCGCGCuggcGuCGGGCgacgaGCGCUa -3'
miRNA:   3'- aCGGCGUGuua-C-GCCCGaag--CGUGGg -5'
23888 5' -57.6 NC_005262.1 + 35197 0.66 0.601022
Target:  5'- aUGCCGCGCAugaaGCggaucacgccguaGGGCaugccgUCGCGCgCg -3'
miRNA:   3'- -ACGGCGUGUua--CG-------------CCCGa-----AGCGUGgG- -5'
23888 5' -57.6 NC_005262.1 + 15444 0.66 0.591358
Target:  5'- gGCCGCcaGCAGcGcCGGGUcggUCGUGCCg -3'
miRNA:   3'- aCGGCG--UGUUaC-GCCCGa--AGCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 46211 0.66 0.591358
Target:  5'- cGCUGCGCcgccaGCuucuccucGGCUUCGCGCgCCg -3'
miRNA:   3'- aCGGCGUGuua--CGc-------CCGAAGCGUG-GG- -5'
23888 5' -57.6 NC_005262.1 + 41561 0.66 0.591358
Target:  5'- gGCCgGC-CGGcGUGGGCggCGCGgCCg -3'
miRNA:   3'- aCGG-CGuGUUaCGCCCGaaGCGUgGG- -5'
23888 5' -57.6 NC_005262.1 + 11417 0.66 0.591358
Target:  5'- cGCCGCGCcgggccgccgaaGGUGCGcGacacgcCGCGCCCg -3'
miRNA:   3'- aCGGCGUG------------UUACGCcCgaa---GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 5178 0.66 0.591358
Target:  5'- gGCCG-GCGucGCGGGCgcgggCGCGgCCg -3'
miRNA:   3'- aCGGCgUGUuaCGCCCGaa---GCGUgGG- -5'
23888 5' -57.6 NC_005262.1 + 11729 0.66 0.591358
Target:  5'- gUGuuGCGC-AUGCucGGCUUCGCGaucuUCCu -3'
miRNA:   3'- -ACggCGUGuUACGc-CCGAAGCGU----GGG- -5'
23888 5' -57.6 NC_005262.1 + 45683 0.66 0.590285
Target:  5'- gUGCCGCACuucGUGCgcaucgaGGGCcg-GCAgCCg -3'
miRNA:   3'- -ACGGCGUGu--UACG-------CCCGaagCGUgGG- -5'
23888 5' -57.6 NC_005262.1 + 5819 0.67 0.58172
Target:  5'- -uCCGUAggaGAUGCGGGCgcgccaauuucaagCGCGCUCg -3'
miRNA:   3'- acGGCGUg--UUACGCCCGaa------------GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 47755 0.67 0.580651
Target:  5'- gGCCGCggcgaacccgGCAucgcGCGGGCUcccCGUGCUCg -3'
miRNA:   3'- aCGGCG----------UGUua--CGCCCGAa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 14001 0.67 0.580651
Target:  5'- gGCCGgACGGUGCagGGGCguccggCGCGgCa -3'
miRNA:   3'- aCGGCgUGUUACG--CCCGaa----GCGUgGg -5'
23888 5' -57.6 NC_005262.1 + 63571 0.67 0.580651
Target:  5'- cGCCGCcgGCGGUaGCGugucuGGCUcCGcCGCCCc -3'
miRNA:   3'- aCGGCG--UGUUA-CGC-----CCGAaGC-GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 50303 0.67 0.580651
Target:  5'- gGCCGCGCGGauugaggaGCcGGCcgcaGCGCCCg -3'
miRNA:   3'- aCGGCGUGUUa-------CGcCCGaag-CGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 50539 0.67 0.580651
Target:  5'- cUGgUGCugAugaGCaGGCUcgCGCACCCg -3'
miRNA:   3'- -ACgGCGugUua-CGcCCGAa-GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 62755 0.67 0.579582
Target:  5'- cGCCGCAgCAuucggcacGUGGGUcgccagcgagggaUUCGCGCCg -3'
miRNA:   3'- aCGGCGU-GUua------CGCCCG-------------AAGCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 20813 0.67 0.579582
Target:  5'- aGCCGCgaaucgacagggaACAucGCgGGGCgcgGCACCCg -3'
miRNA:   3'- aCGGCG-------------UGUuaCG-CCCGaagCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 51567 0.67 0.569986
Target:  5'- gGUCGCGC---GCGGaGCUugagCGCGCCg -3'
miRNA:   3'- aCGGCGUGuuaCGCC-CGAa---GCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.