miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23889 3' -58 NC_005262.1 + 48117 0.66 0.60129
Target:  5'- cGCGCCgcgcGCAagAGCUCGGCgUCGa -3'
miRNA:   3'- -UGUGGacuuCGUcgUCGAGCCGgAGC- -5'
23889 3' -58 NC_005262.1 + 46641 0.66 0.60129
Target:  5'- gGCACgCUGAuggccgacAGCGGCAGCaUGGCgC-CGg -3'
miRNA:   3'- -UGUG-GACU--------UCGUCGUCGaGCCG-GaGC- -5'
23889 3' -58 NC_005262.1 + 38288 0.66 0.60021
Target:  5'- uGCugCUGuuguuguGGGCGaacaaCAGCUCGGCCUUc -3'
miRNA:   3'- -UGugGAC-------UUCGUc----GUCGAGCCGGAGc -5'
23889 3' -58 NC_005262.1 + 33476 0.66 0.590507
Target:  5'- uGCugCUGgcGCAucucgcucGCGGuCUgGGCCUUGu -3'
miRNA:   3'- -UGugGACuuCGU--------CGUC-GAgCCGGAGC- -5'
23889 3' -58 NC_005262.1 + 52946 0.66 0.590507
Target:  5'- cCGCCUGGgcuucgccGGCGGCAagguGCUCGaGCCgggCa -3'
miRNA:   3'- uGUGGACU--------UCGUCGU----CGAGC-CGGa--Gc -5'
23889 3' -58 NC_005262.1 + 13208 0.66 0.58943
Target:  5'- cGCGCUaccggguUGAgcGGCAGCgGGCUCGGgCUgCGg -3'
miRNA:   3'- -UGUGG-------ACU--UCGUCG-UCGAGCCgGA-GC- -5'
23889 3' -58 NC_005262.1 + 57802 0.66 0.579758
Target:  5'- aGCAgaUGAgcaacgAGCAGCAGC-CGGCCgagCa -3'
miRNA:   3'- -UGUggACU------UCGUCGUCGaGCCGGa--Gc -5'
23889 3' -58 NC_005262.1 + 63707 0.66 0.579758
Target:  5'- uGCGCa-GAAGCGuGCGGCgCGGCCg-- -3'
miRNA:   3'- -UGUGgaCUUCGU-CGUCGaGCCGGagc -5'
23889 3' -58 NC_005262.1 + 51397 0.66 0.579758
Target:  5'- cGCGCCUGAccguguGCAccGCGuGCUCGGCggCGc -3'
miRNA:   3'- -UGUGGACUu-----CGU--CGU-CGAGCCGgaGC- -5'
23889 3' -58 NC_005262.1 + 6624 0.66 0.579758
Target:  5'- uGCACCUGGAauucgauguGCGGCGGC---GCUUCGa -3'
miRNA:   3'- -UGUGGACUU---------CGUCGUCGagcCGGAGC- -5'
23889 3' -58 NC_005262.1 + 52134 0.66 0.578685
Target:  5'- cUACCUgcugucguucuggGAGGCGGCGcGCaacuacccCGGCCUCGa -3'
miRNA:   3'- uGUGGA-------------CUUCGUCGU-CGa-------GCCGGAGC- -5'
23889 3' -58 NC_005262.1 + 3734 0.66 0.569051
Target:  5'- uGCGCCUGGAuggguuccGC-GCGGCUCaGGCgaUCGa -3'
miRNA:   3'- -UGUGGACUU--------CGuCGUCGAG-CCGg-AGC- -5'
23889 3' -58 NC_005262.1 + 24197 0.66 0.569051
Target:  5'- cACGCCcGAGGCGGCAGCcgCGacGCUgCGc -3'
miRNA:   3'- -UGUGGaCUUCGUCGUCGa-GC--CGGaGC- -5'
23889 3' -58 NC_005262.1 + 21544 0.66 0.569051
Target:  5'- uCGCCgcagUGAGcGCGGC-GCUCGGCaUCGg -3'
miRNA:   3'- uGUGG----ACUU-CGUCGuCGAGCCGgAGC- -5'
23889 3' -58 NC_005262.1 + 53086 0.66 0.569051
Target:  5'- aGCGCCgGccGCGuGC-GCgCGGCCUCGa -3'
miRNA:   3'- -UGUGGaCuuCGU-CGuCGaGCCGGAGC- -5'
23889 3' -58 NC_005262.1 + 46809 0.66 0.558394
Target:  5'- cGCGCUcGGccGGCGGCAGCagGGCaauaUCGg -3'
miRNA:   3'- -UGUGGaCU--UCGUCGUCGagCCGg---AGC- -5'
23889 3' -58 NC_005262.1 + 12387 0.67 0.538309
Target:  5'- cGCGCCgccGAGCAcGCGGUgcacacggucaggcgCGGCCUUGg -3'
miRNA:   3'- -UGUGGac-UUCGU-CGUCGa--------------GCCGGAGC- -5'
23889 3' -58 NC_005262.1 + 4413 0.67 0.526794
Target:  5'- cGCGCCUGcugcgcGAGCGccuGgAGCUCGGCgUUGc -3'
miRNA:   3'- -UGUGGAC------UUCGU---CgUCGAGCCGgAGC- -5'
23889 3' -58 NC_005262.1 + 33167 0.67 0.526794
Target:  5'- gGCACCUugccGAgcgucGGCGGCGGCUCGauCUUCGc -3'
miRNA:   3'- -UGUGGA----CU-----UCGUCGUCGAGCc-GGAGC- -5'
23889 3' -58 NC_005262.1 + 12937 0.67 0.526794
Target:  5'- gGCGCgCUGAAGggcgugcgcgaCGGCAucgccgaccGCUCGGCgUCGa -3'
miRNA:   3'- -UGUG-GACUUC-----------GUCGU---------CGAGCCGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.