miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23889 5' -60.4 NC_005262.1 + 51614 0.66 0.484393
Target:  5'- gCGCGAuuuGCUcCUGCCGcGCagaCAGCGcgGCc -3'
miRNA:   3'- -GCGCUu--CGA-GACGGC-CG---GUCGCa-CGu -5'
23889 5' -60.4 NC_005262.1 + 15497 0.66 0.484393
Target:  5'- gCGCGGcGGCUCgcucaCCGGCgAGC-UGCAc -3'
miRNA:   3'- -GCGCU-UCGAGac---GGCCGgUCGcACGU- -5'
23889 5' -60.4 NC_005262.1 + 13510 0.66 0.484393
Target:  5'- gCGCGGccgucacgGGCUCgGCCGGCgCgGGCGcGCc -3'
miRNA:   3'- -GCGCU--------UCGAGaCGGCCG-G-UCGCaCGu -5'
23889 5' -60.4 NC_005262.1 + 27466 0.66 0.484393
Target:  5'- --aGAucAGCUUUGCCGGCgAGCGcaccgGCc -3'
miRNA:   3'- gcgCU--UCGAGACGGCCGgUCGCa----CGu -5'
23889 5' -60.4 NC_005262.1 + 7975 0.66 0.484393
Target:  5'- uCGCGAAGCgCUcacgaccucguaGCC-GCCGGCG-GCGu -3'
miRNA:   3'- -GCGCUUCGaGA------------CGGcCGGUCGCaCGU- -5'
23889 5' -60.4 NC_005262.1 + 57446 0.66 0.474565
Target:  5'- gCGCGuguucGAGCUCUGCCGcGaCUacaAGCG-GCGg -3'
miRNA:   3'- -GCGC-----UUCGAGACGGC-C-GG---UCGCaCGU- -5'
23889 5' -60.4 NC_005262.1 + 20740 0.66 0.474565
Target:  5'- cCGCGgcGCgcggUGCCGGCCGGguCGaUGUAc -3'
miRNA:   3'- -GCGCuuCGag--ACGGCCGGUC--GC-ACGU- -5'
23889 5' -60.4 NC_005262.1 + 49244 0.66 0.474565
Target:  5'- gGCGAGacGC-CUGCCGauCCAGCGcaUGCAc -3'
miRNA:   3'- gCGCUU--CGaGACGGCc-GGUCGC--ACGU- -5'
23889 5' -60.4 NC_005262.1 + 12400 0.66 0.464838
Target:  5'- aCGCGGugcacacggucaGGCgcgGCCuuGGCCGGCGUcGCGg -3'
miRNA:   3'- -GCGCU------------UCGagaCGG--CCGGUCGCA-CGU- -5'
23889 5' -60.4 NC_005262.1 + 46806 0.66 0.464838
Target:  5'- gCGCGc-GCUCgGCCGGCggCAGCaggGCAa -3'
miRNA:   3'- -GCGCuuCGAGaCGGCCG--GUCGca-CGU- -5'
23889 5' -60.4 NC_005262.1 + 63680 0.67 0.430715
Target:  5'- -aUGGAGgUCggucGCCGGCCggugacaugcgcagaAGCGUGCGg -3'
miRNA:   3'- gcGCUUCgAGa---CGGCCGG---------------UCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 8240 0.67 0.427015
Target:  5'- gGCGAAGCUCgaaGCCGaGCgcgcgaaagCAGCG-GCc -3'
miRNA:   3'- gCGCUUCGAGa--CGGC-CG---------GUCGCaCGu -5'
23889 5' -60.4 NC_005262.1 + 40445 0.67 0.427015
Target:  5'- cCGCGc-GCUUcacGCCGGCCGuggucgagcGCGUGCu -3'
miRNA:   3'- -GCGCuuCGAGa--CGGCCGGU---------CGCACGu -5'
23889 5' -60.4 NC_005262.1 + 12534 0.67 0.427015
Target:  5'- gGUGAGGUUCagcuUGCCGuccuuaccguaGCCGGCGcGCAu -3'
miRNA:   3'- gCGCUUCGAG----ACGGC-----------CGGUCGCaCGU- -5'
23889 5' -60.4 NC_005262.1 + 47584 0.67 0.417847
Target:  5'- aGCGAAGCg--GCUGGCUuucAGCGaccGCAu -3'
miRNA:   3'- gCGCUUCGagaCGGCCGG---UCGCa--CGU- -5'
23889 5' -60.4 NC_005262.1 + 33741 0.67 0.417847
Target:  5'- gGCGAAGCUC-GCCGaa-GGCGcUGCGu -3'
miRNA:   3'- gCGCUUCGAGaCGGCcggUCGC-ACGU- -5'
23889 5' -60.4 NC_005262.1 + 49707 0.67 0.417847
Target:  5'- cCGCGAcGGCg-UGCCGGgCGGCGaaccgGCGg -3'
miRNA:   3'- -GCGCU-UCGagACGGCCgGUCGCa----CGU- -5'
23889 5' -60.4 NC_005262.1 + 15957 0.67 0.4088
Target:  5'- aCGCucGGCUuccggucgacCUGCUGGCgaucgacgagauCGGCGUGCAg -3'
miRNA:   3'- -GCGcuUCGA----------GACGGCCG------------GUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 2049 0.67 0.4088
Target:  5'- gCGCGuAGCgagCaucCCaGCCAGCGUGCGc -3'
miRNA:   3'- -GCGCuUCGa--Gac-GGcCGGUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 50419 0.67 0.4088
Target:  5'- cCGCGGAGCgc-GagGGCC-GCGUGCAc -3'
miRNA:   3'- -GCGCUUCGagaCggCCGGuCGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.