miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23889 5' -60.4 NC_005262.1 + 2049 0.67 0.4088
Target:  5'- gCGCGuAGCgagCaucCCaGCCAGCGUGCGc -3'
miRNA:   3'- -GCGCuUCGa--Gac-GGcCGGUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 3160 0.78 0.067073
Target:  5'- cCGCGguGCUC-GCCGcucGCCAGCGUGCGc -3'
miRNA:   3'- -GCGCuuCGAGaCGGC---CGGUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 3236 0.67 0.399876
Target:  5'- cCGCGccGAGC---GCCGGCguCAGCGUGCc -3'
miRNA:   3'- -GCGC--UUCGagaCGGCCG--GUCGCACGu -5'
23889 5' -60.4 NC_005262.1 + 4932 0.69 0.308078
Target:  5'- gCGCGGAGCUgcGCCGGCgugacgucgccgauCuGCGUGCc -3'
miRNA:   3'- -GCGCUUCGAgaCGGCCG--------------GuCGCACGu -5'
23889 5' -60.4 NC_005262.1 + 5029 0.71 0.230926
Target:  5'- aGCGGcaguuGCUC-GCCGGCCGGCGccugaucgGCGg -3'
miRNA:   3'- gCGCUu----CGAGaCGGCCGGUCGCa-------CGU- -5'
23889 5' -60.4 NC_005262.1 + 5973 0.68 0.357172
Target:  5'- gGgGGucGGCuUUUGCCGGCCGGC-UGCu -3'
miRNA:   3'- gCgCU--UCG-AGACGGCCGGUCGcACGu -5'
23889 5' -60.4 NC_005262.1 + 6845 0.67 0.399876
Target:  5'- cCGCGAA-CUCgcccGCgCGGaUCGGCGUGCGc -3'
miRNA:   3'- -GCGCUUcGAGa---CG-GCC-GGUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 6883 0.7 0.255294
Target:  5'- aGCGcGGCcuugaUCUcGCCGGCgAGCGUGUu -3'
miRNA:   3'- gCGCuUCG-----AGA-CGGCCGgUCGCACGu -5'
23889 5' -60.4 NC_005262.1 + 7975 0.66 0.484393
Target:  5'- uCGCGAAGCgCUcacgaccucguaGCC-GCCGGCG-GCGu -3'
miRNA:   3'- -GCGCUUCGaGA------------CGGcCGGUCGCaCGU- -5'
23889 5' -60.4 NC_005262.1 + 8240 0.67 0.427015
Target:  5'- gGCGAAGCUCgaaGCCGaGCgcgcgaaagCAGCG-GCc -3'
miRNA:   3'- gCGCUUCGAGa--CGGC-CG---------GUCGCaCGu -5'
23889 5' -60.4 NC_005262.1 + 10214 0.72 0.208549
Target:  5'- uGCGcGGUacaugCUGCCGGUCAgcGCGUGCGc -3'
miRNA:   3'- gCGCuUCGa----GACGGCCGGU--CGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 12400 0.66 0.464838
Target:  5'- aCGCGGugcacacggucaGGCgcgGCCuuGGCCGGCGUcGCGg -3'
miRNA:   3'- -GCGCU------------UCGagaCGG--CCGGUCGCA-CGU- -5'
23889 5' -60.4 NC_005262.1 + 12534 0.67 0.427015
Target:  5'- gGUGAGGUUCagcuUGCCGuccuuaccguaGCCGGCGcGCAu -3'
miRNA:   3'- gCGCUUCGAG----ACGGC-----------CGGUCGCaCGU- -5'
23889 5' -60.4 NC_005262.1 + 13459 0.68 0.357172
Target:  5'- uCGCGGGcGCUucgucCUGCgCGGCgGGCGcUGCGg -3'
miRNA:   3'- -GCGCUU-CGA-----GACG-GCCGgUCGC-ACGU- -5'
23889 5' -60.4 NC_005262.1 + 13510 0.66 0.484393
Target:  5'- gCGCGGccgucacgGGCUCgGCCGGCgCgGGCGcGCc -3'
miRNA:   3'- -GCGCU--------UCGAGaCGGCCG-G-UCGCaCGu -5'
23889 5' -60.4 NC_005262.1 + 13683 0.68 0.357172
Target:  5'- aGCGAGcGCUCgGCCGGCUucuguucGCGcgGCGc -3'
miRNA:   3'- gCGCUU-CGAGaCGGCCGGu------CGCa-CGU- -5'
23889 5' -60.4 NC_005262.1 + 15497 0.66 0.484393
Target:  5'- gCGCGGcGGCUCgcucaCCGGCgAGC-UGCAc -3'
miRNA:   3'- -GCGCU-UCGAGac---GGCCGgUCGcACGU- -5'
23889 5' -60.4 NC_005262.1 + 15757 0.73 0.156471
Target:  5'- gGaCGAAGCacCUGCCGGCCGGCGa--- -3'
miRNA:   3'- gC-GCUUCGa-GACGGCCGGUCGCacgu -5'
23889 5' -60.4 NC_005262.1 + 15957 0.67 0.4088
Target:  5'- aCGCucGGCUuccggucgacCUGCUGGCgaucgacgagauCGGCGUGCAg -3'
miRNA:   3'- -GCGcuUCGA----------GACGGCCG------------GUCGCACGU- -5'
23889 5' -60.4 NC_005262.1 + 16041 0.67 0.382406
Target:  5'- gCGCGAugccgGGUUC-GCCgcGGCCGGCG-GCGc -3'
miRNA:   3'- -GCGCU-----UCGAGaCGG--CCGGUCGCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.