miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2389 3' -51.7 NC_001416.1 + 1167 0.72 0.496205
Target:  5'- gGCGU---GGCUUCUG-GUGCCuGGGCg -3'
miRNA:   3'- gCGUAuuaUCGAAGACaCGCGG-CCUG- -5'
2389 3' -51.7 NC_001416.1 + 7489 0.67 0.776635
Target:  5'- aCGCGggaugaaccuGUGGCaUUUGUGCuGCCGGGa -3'
miRNA:   3'- -GCGUau--------UAUCGaAGACACG-CGGCCUg -5'
2389 3' -51.7 NC_001416.1 + 20211 0.67 0.807271
Target:  5'- uGC-UGAUGccGCUUC--UGCGCCGGAg -3'
miRNA:   3'- gCGuAUUAU--CGAAGacACGCGGCCUg -5'
2389 3' -51.7 NC_001416.1 + 40276 1.12 0.001122
Target:  5'- aCGCAUAAUAGCUUCUGUGCGCCGGACg -3'
miRNA:   3'- -GCGUAUUAUCGAAGACACGCGGCCUG- -5'
2389 3' -51.7 NC_001416.1 + 40710 0.68 0.755373
Target:  5'- uGCGUGaAUAGCguuuugCUGaUGUGCUGGAg -3'
miRNA:   3'- gCGUAU-UAUCGaa----GAC-ACGCGGCCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.