miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2389 5' -50.5 NC_001416.1 + 1160 0.66 0.862719
Target:  5'- aCUAAUGGGCGUggcuucuggugccugGGCGGUAAagCGGCAa -3'
miRNA:   3'- -GAUUGUCCGCG---------------UUGUCAUUg-GUCGUa -5'
2389 5' -50.5 NC_001416.1 + 4697 0.66 0.883614
Target:  5'- --cGCGGGCGCuGCAGccguacucggggaUGACCGGUu- -3'
miRNA:   3'- gauUGUCCGCGuUGUC-------------AUUGGUCGua -5'
2389 5' -50.5 NC_001416.1 + 5617 0.7 0.644704
Target:  5'- --cACAGGCGC-GCAGUGACaCuGCGc -3'
miRNA:   3'- gauUGUCCGCGuUGUCAUUG-GuCGUa -5'
2389 5' -50.5 NC_001416.1 + 5776 0.73 0.494946
Target:  5'- --cGCAGG-GCAACAGUGACCcGGCu- -3'
miRNA:   3'- gauUGUCCgCGUUGUCAUUGG-UCGua -5'
2389 5' -50.5 NC_001416.1 + 9213 0.75 0.400936
Target:  5'- -gAGCAGGgGCAGCAGgcgcuGCUGGCGUg -3'
miRNA:   3'- gaUUGUCCgCGUUGUCau---UGGUCGUA- -5'
2389 5' -50.5 NC_001416.1 + 9503 0.74 0.451813
Target:  5'- gCUGGCAGGCGUcACGGUcauGCCGGUu- -3'
miRNA:   3'- -GAUUGUCCGCGuUGUCAu--UGGUCGua -5'
2389 5' -50.5 NC_001416.1 + 11835 0.68 0.759333
Target:  5'- cCUGACGGGCGguAUAuuucuCCAGCGg -3'
miRNA:   3'- -GAUUGUCCGCguUGUcauu-GGUCGUa -5'
2389 5' -50.5 NC_001416.1 + 12070 0.67 0.831585
Target:  5'- -aGGC-GGCGCAAC-GUcGCCAGCu- -3'
miRNA:   3'- gaUUGuCCGCGUUGuCAuUGGUCGua -5'
2389 5' -50.5 NC_001416.1 + 12207 0.66 0.884412
Target:  5'- -cAGCAGGCGgauaaauucgcaCAGCAGcAACgGGCAa -3'
miRNA:   3'- gaUUGUCCGC------------GUUGUCaUUGgUCGUa -5'
2389 5' -50.5 NC_001416.1 + 13564 0.78 0.264584
Target:  5'- cCUGGCAGGgGCGACAGU-AUCAGCc- -3'
miRNA:   3'- -GAUUGUCCgCGUUGUCAuUGGUCGua -5'
2389 5' -50.5 NC_001416.1 + 13706 0.7 0.668155
Target:  5'- uCUggUcGGCGgAACGGUGGuCCGGCGUa -3'
miRNA:   3'- -GAuuGuCCGCgUUGUCAUU-GGUCGUA- -5'
2389 5' -50.5 NC_001416.1 + 13987 0.74 0.420851
Target:  5'- ---cCAGGUGCAGguGuUGGCCAGCAUg -3'
miRNA:   3'- gauuGUCCGCGUUguC-AUUGGUCGUA- -5'
2389 5' -50.5 NC_001416.1 + 18856 0.7 0.679829
Target:  5'- -aAACAGGCGCu--GGgcAUCAGCGUg -3'
miRNA:   3'- gaUUGUCCGCGuugUCauUGGUCGUA- -5'
2389 5' -50.5 NC_001416.1 + 39473 0.76 0.344924
Target:  5'- -aGGCAGGCGUGACA---GCCAGCAa -3'
miRNA:   3'- gaUUGUCCGCGUUGUcauUGGUCGUa -5'
2389 5' -50.5 NC_001416.1 + 40311 1.07 0.002801
Target:  5'- gCUAACAGGCGCAACAGUAACCAGCAUa -3'
miRNA:   3'- -GAUUGUCCGCGUUGUCAUUGGUCGUA- -5'
2389 5' -50.5 NC_001416.1 + 45629 0.68 0.791459
Target:  5'- -cAACAGGCGCcgGACGcu-ACCAGCu- -3'
miRNA:   3'- gaUUGUCCGCG--UUGUcauUGGUCGua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.