miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23890 5' -57.8 NC_005262.1 + 11356 0.66 0.629869
Target:  5'- cGCgCGCGGCacgucgacgaugaagCGCaCgacgUUCGCGCGcgGCu -3'
miRNA:   3'- aCG-GCGCCG---------------GUG-Ga---AAGCGCGCuaUG- -5'
23890 5' -57.8 NC_005262.1 + 40461 0.66 0.625557
Target:  5'- gGCCGUGGUCgaGCgCgugcUCGUGCGcgGCg -3'
miRNA:   3'- aCGGCGCCGG--UG-Gaa--AGCGCGCuaUG- -5'
23890 5' -57.8 NC_005262.1 + 14074 0.66 0.625557
Target:  5'- gGCUuCGGCCGCCggUUCGcCGCccgGCa -3'
miRNA:   3'- aCGGcGCCGGUGGa-AAGC-GCGcuaUG- -5'
23890 5' -57.8 NC_005262.1 + 6095 0.66 0.625557
Target:  5'- cGUgGCGGCCuaccgaaagcACCUUgccgcgcccggCGCGCGAg-- -3'
miRNA:   3'- aCGgCGCCGG----------UGGAAa----------GCGCGCUaug -5'
23890 5' -57.8 NC_005262.1 + 4672 0.66 0.625557
Target:  5'- gGCC-CGGCCgguucGCCUcg-GCGCGGUAg -3'
miRNA:   3'- aCGGcGCCGG-----UGGAaagCGCGCUAUg -5'
23890 5' -57.8 NC_005262.1 + 31284 0.66 0.625557
Target:  5'- cGuCCGCGGCCAaga-UCGCgGCGAc-- -3'
miRNA:   3'- aC-GGCGCCGGUggaaAGCG-CGCUaug -5'
23890 5' -57.8 NC_005262.1 + 35196 0.66 0.625557
Target:  5'- cGCCGCguGGCCAgCCUacgUC-CGCaagGAUGCg -3'
miRNA:   3'- aCGGCG--CCGGU-GGAa--AGcGCG---CUAUG- -5'
23890 5' -57.8 NC_005262.1 + 4557 0.66 0.625557
Target:  5'- cGCgCGCGGCgCAUCUcgCGCcaGCGGcgGCg -3'
miRNA:   3'- aCG-GCGCCG-GUGGAaaGCG--CGCUa-UG- -5'
23890 5' -57.8 NC_005262.1 + 8777 0.66 0.625557
Target:  5'- uUGCC-CGcGCCgACCgcgUGCGCGAggUACa -3'
miRNA:   3'- -ACGGcGC-CGG-UGGaaaGCGCGCU--AUG- -5'
23890 5' -57.8 NC_005262.1 + 58207 0.66 0.624479
Target:  5'- cGCCGCGGUguacucgaaggauCACUUcaggUUCGUGCGuggugACg -3'
miRNA:   3'- aCGGCGCCG-------------GUGGA----AAGCGCGCua---UG- -5'
23890 5' -57.8 NC_005262.1 + 40836 0.66 0.621246
Target:  5'- gUGUCGUGGaagugcagcaucaCGCCUcccUCGCGCGGaGCa -3'
miRNA:   3'- -ACGGCGCCg------------GUGGAa--AGCGCGCUaUG- -5'
23890 5' -57.8 NC_005262.1 + 16521 0.66 0.614782
Target:  5'- cGCCGCGGCguccguuuuCGCCUUguccUGCGCc-UGCu -3'
miRNA:   3'- aCGGCGCCG---------GUGGAAa---GCGCGcuAUG- -5'
23890 5' -57.8 NC_005262.1 + 9927 0.66 0.614782
Target:  5'- cGCCuuguCGGCCGgCUUgaGCGCGAUcuGCu -3'
miRNA:   3'- aCGGc---GCCGGUgGAAagCGCGCUA--UG- -5'
23890 5' -57.8 NC_005262.1 + 4856 0.66 0.614782
Target:  5'- cUGCUGCGcGCCgACCgagaagCGCGCGc--- -3'
miRNA:   3'- -ACGGCGC-CGG-UGGaaa---GCGCGCuaug -5'
23890 5' -57.8 NC_005262.1 + 7763 0.66 0.614782
Target:  5'- cUGCgGCGGgC-CCUUgcgguugcggaUCGCgGUGAUGCg -3'
miRNA:   3'- -ACGgCGCCgGuGGAA-----------AGCG-CGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 11448 0.66 0.614782
Target:  5'- cGCCGCGcccgcgcaucguGCCuACCgcgcucgCGCGCGAg-- -3'
miRNA:   3'- aCGGCGC------------CGG-UGGaaa----GCGCGCUaug -5'
23890 5' -57.8 NC_005262.1 + 16569 0.66 0.614782
Target:  5'- gGCCGCGGauGCCgagcaggCGCGUG-UGCu -3'
miRNA:   3'- aCGGCGCCggUGGaaa----GCGCGCuAUG- -5'
23890 5' -57.8 NC_005262.1 + 17075 0.66 0.604022
Target:  5'- cGCCGauaGGCgCGCCcgUCGaCGCGGc-- -3'
miRNA:   3'- aCGGCg--CCG-GUGGaaAGC-GCGCUaug -5'
23890 5' -57.8 NC_005262.1 + 60506 0.66 0.604022
Target:  5'- gGCCGCgcggcgcaGGCCGCCaagaGCGUGAc-- -3'
miRNA:   3'- aCGGCG--------CCGGUGGaaagCGCGCUaug -5'
23890 5' -57.8 NC_005262.1 + 30133 0.66 0.604022
Target:  5'- gUGCCGCugcuGGUCGCCgaa-GCGCcggcgGAUGCc -3'
miRNA:   3'- -ACGGCG----CCGGUGGaaagCGCG-----CUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.