miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23890 5' -57.8 NC_005262.1 + 51911 1.1 0.000542
Target:  5'- gUGCCGCGGCCACCUUUCGCGCGAUACa -3'
miRNA:   3'- -ACGGCGCCGGUGGAAAGCGCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 46246 0.85 0.036212
Target:  5'- cGCCGCGGCUGCCgccUCGCGCGcgACc -3'
miRNA:   3'- aCGGCGCCGGUGGaa-AGCGCGCuaUG- -5'
23890 5' -57.8 NC_005262.1 + 20670 0.79 0.100509
Target:  5'- cGUCGCGuCCGCCUuguagUUCGUGCGGUGCa -3'
miRNA:   3'- aCGGCGCcGGUGGA-----AAGCGCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 52754 0.78 0.106242
Target:  5'- cGCUGCGGCCugUUgcugCGCGCGGUcuuGCg -3'
miRNA:   3'- aCGGCGCCGGugGAaa--GCGCGCUA---UG- -5'
23890 5' -57.8 NC_005262.1 + 43832 0.77 0.13603
Target:  5'- gGCCGCgGGCCgGCCgcgCGCGgCGGUGCg -3'
miRNA:   3'- aCGGCG-CCGG-UGGaaaGCGC-GCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 25740 0.76 0.147562
Target:  5'- cGCCaGCGGCCguGCCgUUCGuCGUGAUGCc -3'
miRNA:   3'- aCGG-CGCCGG--UGGaAAGC-GCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 11417 0.76 0.151599
Target:  5'- cGCCGCgccgGGCCGCCgaaggUGCGCGAcACg -3'
miRNA:   3'- aCGGCG----CCGGUGGaaa--GCGCGCUaUG- -5'
23890 5' -57.8 NC_005262.1 + 18787 0.76 0.155737
Target:  5'- cUGCCGCGuguuggcguccGCCGCCUgcCGCGCGGacUGCu -3'
miRNA:   3'- -ACGGCGC-----------CGGUGGAaaGCGCGCU--AUG- -5'
23890 5' -57.8 NC_005262.1 + 18013 0.76 0.155737
Target:  5'- aGCaCGCcGCCGCCcUUCGCcGCGAUGCc -3'
miRNA:   3'- aCG-GCGcCGGUGGaAAGCG-CGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 16084 0.75 0.18277
Target:  5'- gGCgGCGaGCCGCCgcccgGCGCGGUGCu -3'
miRNA:   3'- aCGgCGC-CGGUGGaaag-CGCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 19943 0.74 0.208389
Target:  5'- cGCCGagguccugcCGGCCACCgc-CGCGCGcgGCc -3'
miRNA:   3'- aCGGC---------GCCGGUGGaaaGCGCGCuaUG- -5'
23890 5' -57.8 NC_005262.1 + 62107 0.74 0.213871
Target:  5'- cGCCGCGGCaACCgcgUCGCG-GAUGa -3'
miRNA:   3'- aCGGCGCCGgUGGaa-AGCGCgCUAUg -5'
23890 5' -57.8 NC_005262.1 + 51193 0.74 0.224629
Target:  5'- cGCgGCGGCCcgcuggaGCCgcgCGgGCGAUGCu -3'
miRNA:   3'- aCGgCGCCGG-------UGGaaaGCgCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 35623 0.73 0.243163
Target:  5'- uUGUCGaCGGCCGCCg--CGCGCaguUGCg -3'
miRNA:   3'- -ACGGC-GCCGGUGGaaaGCGCGcu-AUG- -5'
23890 5' -57.8 NC_005262.1 + 48075 0.73 0.249408
Target:  5'- cUGCCGCGacgaGCCGCCcggcgccgaCGCGCGAUGa -3'
miRNA:   3'- -ACGGCGC----CGGUGGaaa------GCGCGCUAUg -5'
23890 5' -57.8 NC_005262.1 + 47755 0.73 0.249408
Target:  5'- gGCCGCGGCgaACCcggcaUCGCGCGGg-- -3'
miRNA:   3'- aCGGCGCCGg-UGGaa---AGCGCGCUaug -5'
23890 5' -57.8 NC_005262.1 + 16056 0.73 0.249408
Target:  5'- cGCCGCGGCCGgCgg-CGCaccaGAUACa -3'
miRNA:   3'- aCGGCGCCGGUgGaaaGCGcg--CUAUG- -5'
23890 5' -57.8 NC_005262.1 + 19076 0.73 0.249408
Target:  5'- aGUCGCGGCCgaGCUgcauuuccUCGCGCGcgGCg -3'
miRNA:   3'- aCGGCGCCGG--UGGaa------AGCGCGCuaUG- -5'
23890 5' -57.8 NC_005262.1 + 57729 0.73 0.261637
Target:  5'- gGCCGCGGCCugacgcaACCccgUgGUGCGGUAUc -3'
miRNA:   3'- aCGGCGCCGG-------UGGaa-AgCGCGCUAUG- -5'
23890 5' -57.8 NC_005262.1 + 52229 0.73 0.262294
Target:  5'- cGCCGcCGGCauaGCagcgCGCGUGAUGCa -3'
miRNA:   3'- aCGGC-GCCGg--UGgaaaGCGCGCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.