miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23891 3' -56.7 NC_005262.1 + 42892 0.66 0.687705
Target:  5'- cGCGAGCUaCGgggagauggUGCUAUCgucGUGCGGc -3'
miRNA:   3'- aCGCUCGA-GCaa-------GCGGUAGa--CGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 18156 0.66 0.687705
Target:  5'- cGgGAGCgCGUgccCGCCugAUC-GCGCGAg -3'
miRNA:   3'- aCgCUCGaGCAa--GCGG--UAGaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 58875 0.66 0.687705
Target:  5'- gGCGcAGCccgcgCGUUggcugcUGCCGcgCUGCGCGAu -3'
miRNA:   3'- aCGC-UCGa----GCAA------GCGGUa-GACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 37810 0.66 0.676978
Target:  5'- cGCGAa--CGUgccCGCCGUguaCUGCGCGAg -3'
miRNA:   3'- aCGCUcgaGCAa--GCGGUA---GACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 42867 0.66 0.676978
Target:  5'- cGCGGGCUCG-UCGaCCucggCUaUGCGAu -3'
miRNA:   3'- aCGCUCGAGCaAGC-GGua--GAcGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 34052 0.66 0.676978
Target:  5'- gGCGGGUUagcCGggagCGCCggCUGCGCu- -3'
miRNA:   3'- aCGCUCGA---GCaa--GCGGuaGACGCGcu -5'
23891 3' -56.7 NC_005262.1 + 37491 0.66 0.676978
Target:  5'- -uCGGGCUCuuGUUCGUCGUCUGCcccUGAc -3'
miRNA:   3'- acGCUCGAG--CAAGCGGUAGACGc--GCU- -5'
23891 3' -56.7 NC_005262.1 + 36259 0.66 0.676978
Target:  5'- gGCuGAGCUCGcccUCGUCGg-UGCGCGc -3'
miRNA:   3'- aCG-CUCGAGCa--AGCGGUagACGCGCu -5'
23891 3' -56.7 NC_005262.1 + 25471 0.66 0.666209
Target:  5'- gGCGAuGC-CGcUCGCCAaCUGCaCGAa -3'
miRNA:   3'- aCGCU-CGaGCaAGCGGUaGACGcGCU- -5'
23891 3' -56.7 NC_005262.1 + 8240 0.66 0.666209
Target:  5'- gGCGaAGCUCGaa-GCCGagcGCGCGAa -3'
miRNA:   3'- aCGC-UCGAGCaagCGGUagaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 13460 0.66 0.655409
Target:  5'- cGCGGGCgc-UUCGUC--CUGCGCGGc -3'
miRNA:   3'- aCGCUCGagcAAGCGGuaGACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 51356 0.66 0.655409
Target:  5'- aUGC-AGCUCGgcaccgCGCCGUC--CGCGAc -3'
miRNA:   3'- -ACGcUCGAGCaa----GCGGUAGacGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 23292 0.66 0.644588
Target:  5'- cGCccGCcccgUCGUUCGCCAUCaaGCGCa- -3'
miRNA:   3'- aCGcuCG----AGCAAGCGGUAGa-CGCGcu -5'
23891 3' -56.7 NC_005262.1 + 53836 0.66 0.644588
Target:  5'- cGCGcacGUUCGgcaaucuucUUCGCCGUCaGCGCGc -3'
miRNA:   3'- aCGCu--CGAGC---------AAGCGGUAGaCGCGCu -5'
23891 3' -56.7 NC_005262.1 + 17129 0.66 0.644588
Target:  5'- gGCGGGCgUCGgugccggCGCCAUgCUGcCGCu- -3'
miRNA:   3'- aCGCUCG-AGCaa-----GCGGUA-GAC-GCGcu -5'
23891 3' -56.7 NC_005262.1 + 34803 0.66 0.644588
Target:  5'- gGCuGAGCUCcuucUCGCCGUgCUGCuggaagGCGAg -3'
miRNA:   3'- aCG-CUCGAGca--AGCGGUA-GACG------CGCU- -5'
23891 3' -56.7 NC_005262.1 + 854 0.66 0.64134
Target:  5'- aGCGAcgcgcgcaaaucgcGCUCGUccuUUGCCAUgagaUUGCGCGc -3'
miRNA:   3'- aCGCU--------------CGAGCA---AGCGGUA----GACGCGCu -5'
23891 3' -56.7 NC_005262.1 + 6952 0.67 0.633756
Target:  5'- cGCcgGAGCUUGUUCugGUCGUCguggUGCGCGu -3'
miRNA:   3'- aCG--CUCGAGCAAG--CGGUAG----ACGCGCu -5'
23891 3' -56.7 NC_005262.1 + 40729 0.67 0.633756
Target:  5'- cUGCGGGCggGUUCGgUAUC-GCGuCGAu -3'
miRNA:   3'- -ACGCUCGagCAAGCgGUAGaCGC-GCU- -5'
23891 3' -56.7 NC_005262.1 + 60450 0.67 0.633756
Target:  5'- aGCGAGCcgCGgccUCGUCAUCaGCGacaaGAg -3'
miRNA:   3'- aCGCUCGa-GCa--AGCGGUAGaCGCg---CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.