miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23891 3' -56.7 NC_005262.1 + 8240 0.66 0.666209
Target:  5'- gGCGaAGCUCGaa-GCCGagcGCGCGAa -3'
miRNA:   3'- aCGC-UCGAGCaagCGGUagaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 27549 0.68 0.558394
Target:  5'- gGCGAGCUCagccccggcgaGgaCGCCGcgCaGCGCGAg -3'
miRNA:   3'- aCGCUCGAG-----------CaaGCGGUa-GaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 21442 0.67 0.579758
Target:  5'- cGCGAGCUgGUcgaguucCGCCGcUUUGCGUGc -3'
miRNA:   3'- aCGCUCGAgCAa------GCGGU-AGACGCGCu -5'
23891 3' -56.7 NC_005262.1 + 53324 0.67 0.579758
Target:  5'- gGCGAGCgaccgCGcgCGCCG-CUaccucgccgaccGCGCGAa -3'
miRNA:   3'- aCGCUCGa----GCaaGCGGUaGA------------CGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 28442 0.67 0.594817
Target:  5'- cGCGccguGCUCGccgugUCGCCGaugaugcgcaugcaCUGCGCGAu -3'
miRNA:   3'- aCGCu---CGAGCa----AGCGGUa-------------GACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 20486 0.67 0.60129
Target:  5'- gGCGAGUgCGUaaUCGCgcgcacCAUCgGCGCGGc -3'
miRNA:   3'- aCGCUCGaGCA--AGCG------GUAGaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 11732 0.67 0.630507
Target:  5'- uUGCGcauGCUCGgcuUCGCgAUCUuccucgaacaacugGCGCGGc -3'
miRNA:   3'- -ACGCu--CGAGCa--AGCGgUAGA--------------CGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 23292 0.66 0.644588
Target:  5'- cGCccGCcccgUCGUUCGCCAUCaaGCGCa- -3'
miRNA:   3'- aCGcuCG----AGCAAGCGGUAGa-CGCGcu -5'
23891 3' -56.7 NC_005262.1 + 51356 0.66 0.655409
Target:  5'- aUGC-AGCUCGgcaccgCGCCGUC--CGCGAc -3'
miRNA:   3'- -ACGcUCGAGCaa----GCGGUAGacGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 5187 0.68 0.558394
Target:  5'- cGCGGGCgCGggCGCgGcCgGCGCGAc -3'
miRNA:   3'- aCGCUCGaGCaaGCGgUaGaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 29283 0.68 0.537259
Target:  5'- cGaCGAGCUCGUgaaGCgCAUCcGCGCc- -3'
miRNA:   3'- aC-GCUCGAGCAag-CG-GUAGaCGCGcu -5'
23891 3' -56.7 NC_005262.1 + 42674 0.68 0.526794
Target:  5'- cUGCGAGC-CGUggCGCCcgCacGCGUGGc -3'
miRNA:   3'- -ACGCUCGaGCAa-GCGGuaGa-CGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 1142 0.73 0.291687
Target:  5'- cUGCGGGCUucgaugcugccgcgCGggcUUGCCAUcCUGCGCGGa -3'
miRNA:   3'- -ACGCUCGA--------------GCa--AGCGGUA-GACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 1820 0.7 0.408725
Target:  5'- gGCGuguGCUUGUgcUCGCCGcaggCUGCGCa- -3'
miRNA:   3'- aCGCu--CGAGCA--AGCGGUa---GACGCGcu -5'
23891 3' -56.7 NC_005262.1 + 21267 0.7 0.417939
Target:  5'- aGCGGGCUUcagCGCCAagaCUGCGCa- -3'
miRNA:   3'- aCGCUCGAGcaaGCGGUa--GACGCGcu -5'
23891 3' -56.7 NC_005262.1 + 17053 0.7 0.417939
Target:  5'- cGCGAGCUCGUcgCGCgCA-CgGCGcCGAu -3'
miRNA:   3'- aCGCUCGAGCAa-GCG-GUaGaCGC-GCU- -5'
23891 3' -56.7 NC_005262.1 + 16625 0.7 0.44632
Target:  5'- -uCGAGCUgGgcgauaUCGUCGUgCUGCGCGAg -3'
miRNA:   3'- acGCUCGAgCa-----AGCGGUA-GACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 56364 0.7 0.456017
Target:  5'- cGCGAGCa-GaUCGCguUCaUGCGCGAc -3'
miRNA:   3'- aCGCUCGagCaAGCGguAG-ACGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 17610 0.69 0.475744
Target:  5'- cGCgGAGCUgGagCGCCAgCaGCGCGAg -3'
miRNA:   3'- aCG-CUCGAgCaaGCGGUaGaCGCGCU- -5'
23891 3' -56.7 NC_005262.1 + 24819 0.69 0.499962
Target:  5'- cGCGAGCUCGcgaucgcggccggCGCCGUgccgaucaccCUGCGCc- -3'
miRNA:   3'- aCGCUCGAGCaa-----------GCGGUA----------GACGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.