miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23891 5' -60.5 NC_005262.1 + 24948 0.66 0.474565
Target:  5'- aUGCCGCGCGG-C-GCGCccagCUUCAGg -3'
miRNA:   3'- -ACGGCGCGUCuGuCGCGccg-GAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 60501 0.66 0.474565
Target:  5'- cGCCGgGCcgcGCGGCGCaGGCCgcCAa -3'
miRNA:   3'- aCGGCgCGuc-UGUCGCG-CCGGaaGUc -5'
23891 5' -60.5 NC_005262.1 + 58449 0.66 0.474565
Target:  5'- cGCCcCgGCAGGCGuGCGCGGCg-UCAc -3'
miRNA:   3'- aCGGcG-CGUCUGU-CGCGCCGgaAGUc -5'
23891 5' -60.5 NC_005262.1 + 14950 0.66 0.470662
Target:  5'- cGCCGCGaaccccuucggaaAGACGGCGaacccCCUUCGGa -3'
miRNA:   3'- aCGGCGCg------------UCUGUCGCgcc--GGAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 50860 0.66 0.464838
Target:  5'- cGUCGCGCAcgcccuuCAGCGC-GCCgcgCAGg -3'
miRNA:   3'- aCGGCGCGUcu-----GUCGCGcCGGaa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 14568 0.66 0.464838
Target:  5'- cG-CGCGCGGACuGCGCgccgccgaGGCCgcccUCGGc -3'
miRNA:   3'- aCgGCGCGUCUGuCGCG--------CCGGa---AGUC- -5'
23891 5' -60.5 NC_005262.1 + 51287 0.66 0.464838
Target:  5'- cGUCGCGCGGcaucugaAGCGCGGUUUcgcUCAc -3'
miRNA:   3'- aCGGCGCGUCug-----UCGCGCCGGA---AGUc -5'
23891 5' -60.5 NC_005262.1 + 12599 0.66 0.464838
Target:  5'- cGcCCGCGCGGcucCAGCG-GGCCgccgcgucgUCGGc -3'
miRNA:   3'- aC-GGCGCGUCu--GUCGCgCCGGa--------AGUC- -5'
23891 5' -60.5 NC_005262.1 + 6354 0.66 0.463871
Target:  5'- cGCCGCggcauccGCGGACGGUGCcggagcguugucGGCCgccuucUCGGc -3'
miRNA:   3'- aCGGCG-------CGUCUGUCGCG------------CCGGa-----AGUC- -5'
23891 5' -60.5 NC_005262.1 + 38860 0.66 0.455216
Target:  5'- cGCCGCGCGGcCAuGUGCGcaucccgccauGCC-UCGGc -3'
miRNA:   3'- aCGGCGCGUCuGU-CGCGC-----------CGGaAGUC- -5'
23891 5' -60.5 NC_005262.1 + 1511 0.66 0.455216
Target:  5'- aGCCGCGCc-----CGCGGCUUUCAu -3'
miRNA:   3'- aCGGCGCGucugucGCGCCGGAAGUc -5'
23891 5' -60.5 NC_005262.1 + 3406 0.66 0.455216
Target:  5'- aUGCCGCcgacgaucuuGCGGcCGGCGaccuucgccGCCUUCAGg -3'
miRNA:   3'- -ACGGCG----------CGUCuGUCGCgc-------CGGAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 41286 0.66 0.454259
Target:  5'- gGCCGCGCguGGGCgacaucaagguauGGCGCGGCg----- -3'
miRNA:   3'- aCGGCGCG--UCUG-------------UCGCGCCGgaaguc -5'
23891 5' -60.5 NC_005262.1 + 29863 0.66 0.445702
Target:  5'- gGCCG-GCcugaccGACGaggagcGCGCGGCgCUUCAGg -3'
miRNA:   3'- aCGGCgCGu-----CUGU------CGCGCCG-GAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 20312 0.66 0.445702
Target:  5'- cGuCCGCGUAGACGGuCGCcGCCa---- -3'
miRNA:   3'- aC-GGCGCGUCUGUC-GCGcCGGaaguc -5'
23891 5' -60.5 NC_005262.1 + 15401 0.66 0.436301
Target:  5'- cGCCGCGCuucAGcgaGGCGCGGUCg---- -3'
miRNA:   3'- aCGGCGCG---UCug-UCGCGCCGGaaguc -5'
23891 5' -60.5 NC_005262.1 + 62327 0.66 0.436301
Target:  5'- cGCCG-GCAGACgAGCggGCGGCgUUUg- -3'
miRNA:   3'- aCGGCgCGUCUG-UCG--CGCCGgAAGuc -5'
23891 5' -60.5 NC_005262.1 + 35509 0.66 0.436301
Target:  5'- cGCuugCGCGCAuaggcGACAGCGCcGGCCg---- -3'
miRNA:   3'- aCG---GCGCGU-----CUGUCGCG-CCGGaaguc -5'
23891 5' -60.5 NC_005262.1 + 21787 0.66 0.435367
Target:  5'- gGCCGCccgauucgagGCGGGCGuucgucgcguucuGCGCGGCggugUCAGg -3'
miRNA:   3'- aCGGCG----------CGUCUGU-------------CGCGCCGga--AGUC- -5'
23891 5' -60.5 NC_005262.1 + 12397 0.66 0.435367
Target:  5'- aGCaCGCGguGcACacggucaGGCGCGGCCUUn-- -3'
miRNA:   3'- aCG-GCGCguC-UG-------UCGCGCCGGAAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.