miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23891 5' -60.5 NC_005262.1 + 51627 1.09 0.000349
Target:  5'- cUGCCGCGCAGACAGCGCGGCCUUCAGg -3'
miRNA:   3'- -ACGGCGCGUCUGUCGCGCCGGAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 41565 0.79 0.059971
Target:  5'- gGCCgGCGUGGGCGGCGCGGCCg---- -3'
miRNA:   3'- aCGG-CGCGUCUGUCGCGCCGGaaguc -5'
23891 5' -60.5 NC_005262.1 + 21542 0.76 0.093559
Target:  5'- cGUCGcCGCAGugAGCGCGGCgCUcggcaUCGGa -3'
miRNA:   3'- aCGGC-GCGUCugUCGCGCCG-GA-----AGUC- -5'
23891 5' -60.5 NC_005262.1 + 44698 0.76 0.096167
Target:  5'- aGCCGuUGguGACGGCGUGGCUgcaUCAGu -3'
miRNA:   3'- aCGGC-GCguCUGUCGCGCCGGa--AGUC- -5'
23891 5' -60.5 NC_005262.1 + 54799 0.76 0.104412
Target:  5'- cGUCGCGCAGAagaugcGCGCGGCgUUUAGc -3'
miRNA:   3'- aCGGCGCGUCUgu----CGCGCCGgAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 2006 0.76 0.104412
Target:  5'- cGCCGCGCAGGCGaaaacGCGCuGGUCggUCGGc -3'
miRNA:   3'- aCGGCGCGUCUGU-----CGCG-CCGGa-AGUC- -5'
23891 5' -60.5 NC_005262.1 + 43843 0.76 0.107305
Target:  5'- gGCCGCGCGcGGCGGUGCG-CCggCAGg -3'
miRNA:   3'- aCGGCGCGU-CUGUCGCGCcGGaaGUC- -5'
23891 5' -60.5 NC_005262.1 + 15308 0.76 0.107305
Target:  5'- cGCCGCGCauGGGCGG-GCGGCCgUCGa -3'
miRNA:   3'- aCGGCGCG--UCUGUCgCGCCGGaAGUc -5'
23891 5' -60.5 NC_005262.1 + 60061 0.75 0.116441
Target:  5'- aGCCGCGCGGAacccauccaGGCGCaGGCCcagcUCAGu -3'
miRNA:   3'- aCGGCGCGUCUg--------UCGCG-CCGGa---AGUC- -5'
23891 5' -60.5 NC_005262.1 + 43930 0.75 0.116441
Target:  5'- gGCCucacuGCGCAGACuGUGCGGCggUCGGa -3'
miRNA:   3'- aCGG-----CGCGUCUGuCGCGCCGgaAGUC- -5'
23891 5' -60.5 NC_005262.1 + 17328 0.73 0.156471
Target:  5'- gGCUGCGUcguGGcCGGCGCGGCaUUCGGg -3'
miRNA:   3'- aCGGCGCG---UCuGUCGCGCCGgAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 46896 0.73 0.169379
Target:  5'- gUGCgGUGCGGGCGGUGCGGUgUggugCGGc -3'
miRNA:   3'- -ACGgCGCGUCUGUCGCGCCGgAa---GUC- -5'
23891 5' -60.5 NC_005262.1 + 50652 0.72 0.178507
Target:  5'- gUGCCGCGCAG-CGcGCGCGGCg----- -3'
miRNA:   3'- -ACGGCGCGUCuGU-CGCGCCGgaaguc -5'
23891 5' -60.5 NC_005262.1 + 34998 0.72 0.178507
Target:  5'- aGCCGgGCAG-CAGCGCgGGCCcgUCc- -3'
miRNA:   3'- aCGGCgCGUCuGUCGCG-CCGGa-AGuc -5'
23891 5' -60.5 NC_005262.1 + 36571 0.72 0.183233
Target:  5'- cGCCGC-CAGAUGGCGCGGa--UCAGu -3'
miRNA:   3'- aCGGCGcGUCUGUCGCGCCggaAGUC- -5'
23891 5' -60.5 NC_005262.1 + 18811 0.72 0.188069
Target:  5'- cUGCCGCGCGGACuGCugcacguCGGCCcUCGc -3'
miRNA:   3'- -ACGGCGCGUCUGuCGc------GCCGGaAGUc -5'
23891 5' -60.5 NC_005262.1 + 12817 0.72 0.188069
Target:  5'- aGCCgGCGCgugaAGAaggAGCGCGGCCUcgCGGg -3'
miRNA:   3'- aCGG-CGCG----UCUg--UCGCGCCGGAa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 13710 0.72 0.188069
Target:  5'- cGCgGCGCGGGuucgguCGGCgcaGCGGCCUUCGu -3'
miRNA:   3'- aCGgCGCGUCU------GUCG---CGCCGGAAGUc -5'
23891 5' -60.5 NC_005262.1 + 50303 0.72 0.190034
Target:  5'- gGCCGCGCGGauugaggagccggccGCAGCGCccGCCgcgCAGg -3'
miRNA:   3'- aCGGCGCGUC---------------UGUCGCGc-CGGaa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 8822 0.72 0.198078
Target:  5'- aUGCCGCGcCAGAUGGCGCgcuucuGGUUUUCGc -3'
miRNA:   3'- -ACGGCGC-GUCUGUCGCG------CCGGAAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.