miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23891 5' -60.5 NC_005262.1 + 917 0.67 0.373864
Target:  5'- -cCCGCGCAGAUcGUGCGGacaugCUUCGa -3'
miRNA:   3'- acGGCGCGUCUGuCGCGCCg----GAAGUc -5'
23891 5' -60.5 NC_005262.1 + 1157 0.69 0.288672
Target:  5'- cUGCCGCGCGGGCuugccauccuGCGCGGaagccCAGu -3'
miRNA:   3'- -ACGGCGCGUCUGu---------CGCGCCggaa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 1511 0.66 0.455216
Target:  5'- aGCCGCGCc-----CGCGGCUUUCAu -3'
miRNA:   3'- aCGGCGCGucugucGCGCCGGAAGUc -5'
23891 5' -60.5 NC_005262.1 + 2006 0.76 0.104412
Target:  5'- cGCCGCGCAGGCGaaaacGCGCuGGUCggUCGGc -3'
miRNA:   3'- aCGGCGCGUCUGU-----CGCG-CCGGa-AGUC- -5'
23891 5' -60.5 NC_005262.1 + 2157 0.69 0.295746
Target:  5'- gGUCaGCGCAu-CAGCGCGGCUauugUCGGa -3'
miRNA:   3'- aCGG-CGCGUcuGUCGCGCCGGa---AGUC- -5'
23891 5' -60.5 NC_005262.1 + 2660 0.67 0.382406
Target:  5'- cGCgGCGcCGGGCGGCGUccuGGCCgccgUAGc -3'
miRNA:   3'- aCGgCGC-GUCUGUCGCG---CCGGaa--GUC- -5'
23891 5' -60.5 NC_005262.1 + 3406 0.66 0.455216
Target:  5'- aUGCCGCcgacgaucuuGCGGcCGGCGaccuucgccGCCUUCAGg -3'
miRNA:   3'- -ACGGCG----------CGUCuGUCGCgc-------CGGAAGUC- -5'
23891 5' -60.5 NC_005262.1 + 4856 0.7 0.249011
Target:  5'- cUGCUGCGCGccGACcgagaAGCGCGcGCCaUCGGu -3'
miRNA:   3'- -ACGGCGCGU--CUG-----UCGCGC-CGGaAGUC- -5'
23891 5' -60.5 NC_005262.1 + 4894 0.69 0.295746
Target:  5'- gGCCGC-CGGccugaucgcGCAGCGCGGCag-CAGc -3'
miRNA:   3'- aCGGCGcGUC---------UGUCGCGCCGgaaGUC- -5'
23891 5' -60.5 NC_005262.1 + 5178 0.72 0.198078
Target:  5'- gGCCGgcguCGCGGGCgcgGGCGCGGCCggCGc -3'
miRNA:   3'- aCGGC----GCGUCUG---UCGCGCCGGaaGUc -5'
23891 5' -60.5 NC_005262.1 + 6072 0.69 0.317772
Target:  5'- gGuuGCGuCAGGC--CGCGGCCUUCu- -3'
miRNA:   3'- aCggCGC-GUCUGucGCGCCGGAAGuc -5'
23891 5' -60.5 NC_005262.1 + 6247 0.67 0.411501
Target:  5'- cGCCGCGCGcacggucuuugccGccucgaugauggucaGCAGCuCGGCCUUCGc -3'
miRNA:   3'- aCGGCGCGU-------------C---------------UGUCGcGCCGGAAGUc -5'
23891 5' -60.5 NC_005262.1 + 6354 0.66 0.463871
Target:  5'- cGCCGCggcauccGCGGACGGUGCcggagcguugucGGCCgccuucUCGGc -3'
miRNA:   3'- aCGGCG-------CGUCUGUCGCG------------CCGGa-----AGUC- -5'
23891 5' -60.5 NC_005262.1 + 6854 0.71 0.221741
Target:  5'- cGcCCGCGCGGAuCggcgugcgcuucucgAGCGCGGCCUUg-- -3'
miRNA:   3'- aC-GGCGCGUCU-G---------------UCGCGCCGGAAguc -5'
23891 5' -60.5 NC_005262.1 + 8822 0.72 0.198078
Target:  5'- aUGCCGCGcCAGAUGGCGCgcuucuGGUUUUCGc -3'
miRNA:   3'- -ACGGCGC-GUCUGUCGCG------CCGGAAGUc -5'
23891 5' -60.5 NC_005262.1 + 8997 0.67 0.417847
Target:  5'- cGCCGCGCGcaucuucugcgcGACGuCGuUGGCCUUCu- -3'
miRNA:   3'- aCGGCGCGU------------CUGUcGC-GCCGGAAGuc -5'
23891 5' -60.5 NC_005262.1 + 10571 0.71 0.213962
Target:  5'- aGCCGCagcguaccGCGGAgCAGCGCGGCgCgagCGGc -3'
miRNA:   3'- aCGGCG--------CGUCU-GUCGCGCCG-Gaa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 10655 0.67 0.417847
Target:  5'- cGCCGCGUcgaAGAacucGCGCGGCaucgCGGu -3'
miRNA:   3'- aCGGCGCG---UCUgu--CGCGCCGgaa-GUC- -5'
23891 5' -60.5 NC_005262.1 + 10711 0.67 0.373864
Target:  5'- gGCCGCGC--GCA-CGCGGCCggCGc -3'
miRNA:   3'- aCGGCGCGucUGUcGCGCCGGaaGUc -5'
23891 5' -60.5 NC_005262.1 + 10851 0.7 0.274925
Target:  5'- uUGCCGCcggcgaagccCAGGCGGCGCaGGCCgUCGu -3'
miRNA:   3'- -ACGGCGc---------GUCUGUCGCG-CCGGaAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.