miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23892 3' -50.4 NC_005262.1 + 17856 0.66 0.966054
Target:  5'- gGCCGUCGAcaGCuACGagGUCGAccacGGAAcGCa -3'
miRNA:   3'- -CGGCAGCU--UG-UGCaaCGGCU----CUUU-CG- -5'
23892 3' -50.4 NC_005262.1 + 43554 0.66 0.962449
Target:  5'- uGCCGUcCGGAUuccucgcgcagACGUgggagGUCGAGGucAGCg -3'
miRNA:   3'- -CGGCA-GCUUG-----------UGCAa----CGGCUCUu-UCG- -5'
23892 3' -50.4 NC_005262.1 + 28534 0.66 0.962449
Target:  5'- cGUgGUCGuGC-CGUUcGCCGGGGgcGCc -3'
miRNA:   3'- -CGgCAGCuUGuGCAA-CGGCUCUuuCG- -5'
23892 3' -50.4 NC_005262.1 + 31086 0.66 0.962449
Target:  5'- cGCCGagcUCGAugAUGUcGCCcaccuGGAGGCc -3'
miRNA:   3'- -CGGC---AGCUugUGCAaCGGcu---CUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 12570 0.66 0.962449
Target:  5'- cGCuCGUCGAGCugcUGcUGCCGccGGcGAGGCg -3'
miRNA:   3'- -CG-GCAGCUUGu--GCaACGGC--UC-UUUCG- -5'
23892 3' -50.4 NC_005262.1 + 22165 0.66 0.960163
Target:  5'- cGCCGagcuggaggcgaaggUCGAgaaGCugGaaGCCGAGAAcGCc -3'
miRNA:   3'- -CGGC---------------AGCU---UGugCaaCGGCUCUUuCG- -5'
23892 3' -50.4 NC_005262.1 + 40464 0.66 0.958587
Target:  5'- cGUgGUCGAGCGCG-UGCuCGuGcgcGGCg -3'
miRNA:   3'- -CGgCAGCUUGUGCaACG-GCuCuu-UCG- -5'
23892 3' -50.4 NC_005262.1 + 56258 0.66 0.958587
Target:  5'- uGUCGUCGAGCGCGccgacgcgccGCCGAaccuGCc -3'
miRNA:   3'- -CGGCAGCUUGUGCaa--------CGGCUcuuuCG- -5'
23892 3' -50.4 NC_005262.1 + 43660 0.66 0.958587
Target:  5'- aCUGUCGAGCugGUgcGUCGGcaGGGGCa -3'
miRNA:   3'- cGGCAGCUUGugCAa-CGGCUc-UUUCG- -5'
23892 3' -50.4 NC_005262.1 + 56544 0.66 0.958587
Target:  5'- uCCGUCGAGCA----GCgCGAGggGcGCa -3'
miRNA:   3'- cGGCAGCUUGUgcaaCG-GCUCuuU-CG- -5'
23892 3' -50.4 NC_005262.1 + 61412 0.66 0.958587
Target:  5'- cGCgCGaggCGAAgGCGgcgGCCGAGGAAu- -3'
miRNA:   3'- -CG-GCa--GCUUgUGCaa-CGGCUCUUUcg -5'
23892 3' -50.4 NC_005262.1 + 19012 0.66 0.958587
Target:  5'- aGCuCGUCGAGCuCGgccUGCCGcGcgcuGGCg -3'
miRNA:   3'- -CG-GCAGCUUGuGCa--ACGGCuCuu--UCG- -5'
23892 3' -50.4 NC_005262.1 + 50985 0.66 0.958186
Target:  5'- cGCCGgagaaggUCGAGCAg---GCCaAGGAAGCg -3'
miRNA:   3'- -CGGC-------AGCUUGUgcaaCGGcUCUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 12414 0.66 0.95446
Target:  5'- uGCUGUCGAucgAgACGguaGCCGAGccgauGCg -3'
miRNA:   3'- -CGGCAGCU---UgUGCaa-CGGCUCuuu--CG- -5'
23892 3' -50.4 NC_005262.1 + 16821 0.66 0.95446
Target:  5'- uGCCuUCGccCACag-GCCGAGAuuGCg -3'
miRNA:   3'- -CGGcAGCuuGUGcaaCGGCUCUuuCG- -5'
23892 3' -50.4 NC_005262.1 + 11349 0.66 0.95446
Target:  5'- cGCCGcUCGcGCGCGgcacGUCGAcGAugAAGCg -3'
miRNA:   3'- -CGGC-AGCuUGUGCaa--CGGCU-CU--UUCG- -5'
23892 3' -50.4 NC_005262.1 + 61063 0.66 0.95446
Target:  5'- aUCGUgcCGGAUACGccGUCGAcGAAGGCg -3'
miRNA:   3'- cGGCA--GCUUGUGCaaCGGCU-CUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 53334 0.66 0.954033
Target:  5'- cGCUGUCGu-CGCGgcuuccgcccggcUUGCCGAGcaucuGCa -3'
miRNA:   3'- -CGGCAGCuuGUGC-------------AACGGCUCuuu--CG- -5'
23892 3' -50.4 NC_005262.1 + 35401 0.66 0.954033
Target:  5'- uGCCGcucgucguucgggUCGAACACuucGCCGcGGAAGUc -3'
miRNA:   3'- -CGGC-------------AGCUUGUGcaaCGGCuCUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 38127 0.66 0.951855
Target:  5'- gGCCGUCGAcucgaugaccagaauGCccgacuuCGgcacgGCCGGGAugGAGCc -3'
miRNA:   3'- -CGGCAGCU---------------UGu------GCaa---CGGCUCU--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.