miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23892 3' -50.4 NC_005262.1 + 17384 0.66 0.950064
Target:  5'- uGCCgGUCGAcucgGCGgccgacaaUGCCGAGAcgcuGGGCg -3'
miRNA:   3'- -CGG-CAGCUug--UGCa-------ACGGCUCU----UUCG- -5'
23892 3' -50.4 NC_005262.1 + 7289 0.66 0.950064
Target:  5'- cGCCGauUCGAgcgGCACGUUcucGCgCGAGuacGGCc -3'
miRNA:   3'- -CGGC--AGCU---UGUGCAA---CG-GCUCuu-UCG- -5'
23892 3' -50.4 NC_005262.1 + 11982 0.66 0.950064
Target:  5'- gGCCGcgcUGAAguCGUcGCCGAGgcGGUa -3'
miRNA:   3'- -CGGCa--GCUUguGCAaCGGCUCuuUCG- -5'
23892 3' -50.4 NC_005262.1 + 6590 0.66 0.950064
Target:  5'- uGCCGcCGAccgGCAgGUccggGUCGAGcgGGAGCg -3'
miRNA:   3'- -CGGCaGCU---UGUgCAa---CGGCUC--UUUCG- -5'
23892 3' -50.4 NC_005262.1 + 50433 0.67 0.940446
Target:  5'- gGCCG-CGuGCACGUcgucgUGCCgcgcGAGGAGGa -3'
miRNA:   3'- -CGGCaGCuUGUGCA-----ACGG----CUCUUUCg -5'
23892 3' -50.4 NC_005262.1 + 22985 0.67 0.940446
Target:  5'- cCCGUCGcAGCccCGUagaUGCCGAuccccguagcGGAAGCg -3'
miRNA:   3'- cGGCAGC-UUGu-GCA---ACGGCU----------CUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 14286 0.67 0.935217
Target:  5'- -gCG-CGAACuguaGCGUUGCguggaCGGGAGGGCg -3'
miRNA:   3'- cgGCaGCUUG----UGCAACG-----GCUCUUUCG- -5'
23892 3' -50.4 NC_005262.1 + 52166 0.67 0.935217
Target:  5'- cGCCGcCGAGC-CGaUGgUGcAGggGGCa -3'
miRNA:   3'- -CGGCaGCUUGuGCaACgGC-UCuuUCG- -5'
23892 3' -50.4 NC_005262.1 + 10699 0.67 0.935217
Target:  5'- cGCCGaCGAugAUGUUGCUcugcGGAuacAGCa -3'
miRNA:   3'- -CGGCaGCUugUGCAACGGc---UCUu--UCG- -5'
23892 3' -50.4 NC_005262.1 + 54208 0.67 0.933593
Target:  5'- cGCCGUUGcACACGgcGCagGAGAucgacuguuuuuggAGGCc -3'
miRNA:   3'- -CGGCAGCuUGUGCaaCGg-CUCU--------------UUCG- -5'
23892 3' -50.4 NC_005262.1 + 45951 0.67 0.931944
Target:  5'- aGCUGUCGAcggcCGCGUuuccaucucgccaguUGCCGGGGucGa -3'
miRNA:   3'- -CGGCAGCUu---GUGCA---------------ACGGCUCUuuCg -5'
23892 3' -50.4 NC_005262.1 + 22130 0.67 0.929706
Target:  5'- uGCCGgcggCGAugACGgcGCCGccGGAAAc- -3'
miRNA:   3'- -CGGCa---GCUugUGCaaCGGC--UCUUUcg -5'
23892 3' -50.4 NC_005262.1 + 30245 0.67 0.929706
Target:  5'- aGCuCGUCGAGCACGaUUuCCGucuuGGucGCg -3'
miRNA:   3'- -CG-GCAGCUUGUGC-AAcGGCu---CUuuCG- -5'
23892 3' -50.4 NC_005262.1 + 61772 0.67 0.929706
Target:  5'- cCCGUCGAgcaGCACGaagcagcGCCGuGGcgugGAGCa -3'
miRNA:   3'- cGGCAGCU---UGUGCaa-----CGGCuCU----UUCG- -5'
23892 3' -50.4 NC_005262.1 + 27427 0.67 0.929706
Target:  5'- uCCGUCGAGauucuugacCACG-UGCCGAucGAucAAGCc -3'
miRNA:   3'- cGGCAGCUU---------GUGCaACGGCU--CU--UUCG- -5'
23892 3' -50.4 NC_005262.1 + 33251 0.67 0.929706
Target:  5'- cGCaCGUCGAGCGCuuccUGUCGAuccgcGAGGCg -3'
miRNA:   3'- -CG-GCAGCUUGUGca--ACGGCUc----UUUCG- -5'
23892 3' -50.4 NC_005262.1 + 45758 0.67 0.923912
Target:  5'- cCCG-CGAACGCGacGCCGAuc-GGCa -3'
miRNA:   3'- cGGCaGCUUGUGCaaCGGCUcuuUCG- -5'
23892 3' -50.4 NC_005262.1 + 10973 0.67 0.923912
Target:  5'- cGCUGUCG-GCGC---GCCGGGAAcGCc -3'
miRNA:   3'- -CGGCAGCuUGUGcaaCGGCUCUUuCG- -5'
23892 3' -50.4 NC_005262.1 + 308 0.67 0.923912
Target:  5'- aGgCGUCGGGCACGccaGCCcauucGAGuAAGCu -3'
miRNA:   3'- -CgGCAGCUUGUGCaa-CGG-----CUCuUUCG- -5'
23892 3' -50.4 NC_005262.1 + 45461 0.68 0.917835
Target:  5'- cGCCGgcgCGGGCAUcaugGCUuuuuaaggaGAGAGAGCg -3'
miRNA:   3'- -CGGCa--GCUUGUGcaa-CGG---------CUCUUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.