miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23892 5' -60.2 NC_005262.1 + 53546 0.66 0.555728
Target:  5'- -cGCCGCGuacccCGAgAuGGUGCUCGGCg -3'
miRNA:   3'- gcCGGCGCua---GCUgU-CCACGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 44665 0.66 0.555728
Target:  5'- gGGUUcCuAUCGACAuGcUGCCCGACCg -3'
miRNA:   3'- gCCGGcGcUAGCUGUcC-ACGGGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 33353 0.66 0.555728
Target:  5'- cCGuGCCGcCGAUCGACAacccgCCGGCCg -3'
miRNA:   3'- -GC-CGGC-GCUAGCUGUccacgGGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 12281 0.66 0.555728
Target:  5'- gCGGCCgGCGAgccgagcuuucUCGGCAacGUGUUCGACg -3'
miRNA:   3'- -GCCGG-CGCU-----------AGCUGUc-CACGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 13699 0.66 0.545567
Target:  5'- uGGCgCGUGAggUCGAa--GUGCCUGACg -3'
miRNA:   3'- gCCG-GCGCU--AGCUgucCACGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 33880 0.66 0.545567
Target:  5'- -cGCgCGCGAgacgaucgugcgUCGGCcGGcgGCCCGAUCg -3'
miRNA:   3'- gcCG-GCGCU------------AGCUGuCCa-CGGGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 17493 0.66 0.545567
Target:  5'- gCGcGCCGCGcgCGACGcgucgaucGGcaGCCUGACg -3'
miRNA:   3'- -GC-CGGCGCuaGCUGU--------CCa-CGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 4830 0.66 0.545567
Target:  5'- aGGCCgccgGCGGcCGGCuGGUucgacugcugcGCgCCGACCg -3'
miRNA:   3'- gCCGG----CGCUaGCUGuCCA-----------CG-GGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 34715 0.66 0.544554
Target:  5'- aGGCCGUcGUUGACcgucacauauuccGGGuUGCCgCGGCUg -3'
miRNA:   3'- gCCGGCGcUAGCUG-------------UCC-ACGG-GCUGG- -5'
23892 5' -60.2 NC_005262.1 + 38979 0.66 0.544554
Target:  5'- cCGGCCGCGAUCGcgagcucGCGcuUGCCCu--- -3'
miRNA:   3'- -GCCGGCGCUAGC-------UGUccACGGGcugg -5'
23892 5' -60.2 NC_005262.1 + 38048 0.66 0.535466
Target:  5'- gGGCCGUGAgCGGCuugccGGccUGCgCGAUCg -3'
miRNA:   3'- gCCGGCGCUaGCUGu----CC--ACGgGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 62294 0.66 0.535466
Target:  5'- -aGCCGCGGgcgCGGCuuGGUGUuuG-CCa -3'
miRNA:   3'- gcCGGCGCUa--GCUGu-CCACGggCuGG- -5'
23892 5' -60.2 NC_005262.1 + 21645 0.66 0.535466
Target:  5'- uCGGCCGCGAcCGG-----GCCCGGCg -3'
miRNA:   3'- -GCCGGCGCUaGCUguccaCGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 30658 0.66 0.534459
Target:  5'- uCGGacaaCGCGGacaUCGACAgcggacgcuggacGGcGCUCGACCg -3'
miRNA:   3'- -GCCg---GCGCU---AGCUGU-------------CCaCGGGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 25731 0.66 0.525431
Target:  5'- aGGCCgagGCGAUCGcGCAGGccgGCaagccgcucaCGGCCc -3'
miRNA:   3'- gCCGG---CGCUAGC-UGUCCa--CGg---------GCUGG- -5'
23892 5' -60.2 NC_005262.1 + 57149 0.66 0.525431
Target:  5'- gCGGCCGUgucGGUCGACAuc--CCCGGCg -3'
miRNA:   3'- -GCCGGCG---CUAGCUGUccacGGGCUGg -5'
23892 5' -60.2 NC_005262.1 + 52952 0.66 0.525431
Target:  5'- gGGCuuCGCcggCGGCaAGGUGCUCGAgCCg -3'
miRNA:   3'- gCCG--GCGcuaGCUG-UCCACGGGCU-GG- -5'
23892 5' -60.2 NC_005262.1 + 57685 0.66 0.525431
Target:  5'- gCGcGCCGgGcgCGGCaAGGUGCUuucgguaGGCCg -3'
miRNA:   3'- -GC-CGGCgCuaGCUG-UCCACGGg------CUGG- -5'
23892 5' -60.2 NC_005262.1 + 13555 0.66 0.514476
Target:  5'- aGGCCGCGAccguugcUUGGCAuccGCUCGGCUg -3'
miRNA:   3'- gCCGGCGCU-------AGCUGUccaCGGGCUGG- -5'
23892 5' -60.2 NC_005262.1 + 15308 0.66 0.509528
Target:  5'- -cGCCGCGcAUgGGCGGGcgGCCgucgagcaacagcuuCGACCa -3'
miRNA:   3'- gcCGGCGC-UAgCUGUCCa-CGG---------------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.