miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23893 3' -58.2 NC_005262.1 + 13507 0.66 0.623867
Target:  5'- uCCGCGcggccgucacGGGCUcg--GCC-GGCGCGGg -3'
miRNA:   3'- -GGCGC----------UCCGAcuuaCGGaCCGUGCCg -5'
23893 3' -58.2 NC_005262.1 + 28804 0.66 0.623867
Target:  5'- cCCGCGcuGCUGcccggcUGCCUGGagcuucgacuUGCGGCc -3'
miRNA:   3'- -GGCGCucCGACuu----ACGGACC----------GUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 41104 0.66 0.623867
Target:  5'- aUGCGAGGCggucGAGgcgcGUCUGcGCACuGGUc -3'
miRNA:   3'- gGCGCUCCGa---CUUa---CGGAC-CGUG-CCG- -5'
23893 3' -58.2 NC_005262.1 + 45222 0.66 0.623867
Target:  5'- uCCGCcGGGCucggccUGAAcGCC-GGCAacuCGGCg -3'
miRNA:   3'- -GGCGcUCCG------ACUUaCGGaCCGU---GCCG- -5'
23893 3' -58.2 NC_005262.1 + 16101 0.66 0.623867
Target:  5'- gCGCGGGcCUGAAggacuuCCUcGGCGCGcGCa -3'
miRNA:   3'- gGCGCUCcGACUUac----GGA-CCGUGC-CG- -5'
23893 3' -58.2 NC_005262.1 + 41741 0.66 0.621736
Target:  5'- aCGaCGGGGaucacgacccaGAAUGCC-GGCAcCGGCg -3'
miRNA:   3'- gGC-GCUCCga---------CUUACGGaCCGU-GCCG- -5'
23893 3' -58.2 NC_005262.1 + 23464 0.66 0.613214
Target:  5'- aUGCGcGGcCUGGAcGaaUGGCugGGCg -3'
miRNA:   3'- gGCGCuCC-GACUUaCggACCGugCCG- -5'
23893 3' -58.2 NC_005262.1 + 56305 0.66 0.613214
Target:  5'- aCCGCGgcuucgacaugaAGGCgUGGAUcgaaaagcGUCUGGUcgaggGCGGCg -3'
miRNA:   3'- -GGCGC------------UCCG-ACUUA--------CGGACCG-----UGCCG- -5'
23893 3' -58.2 NC_005262.1 + 44904 0.66 0.613214
Target:  5'- gCCGUGgucGGGaCUGGAUGC--GGCGCaaGGCg -3'
miRNA:   3'- -GGCGC---UCC-GACUUACGgaCCGUG--CCG- -5'
23893 3' -58.2 NC_005262.1 + 17271 0.66 0.613214
Target:  5'- gCCGCGcuGGGCUGc-UGCgCgGGCAgGGg -3'
miRNA:   3'- -GGCGC--UCCGACuuACG-GaCCGUgCCg -5'
23893 3' -58.2 NC_005262.1 + 13458 0.66 0.602577
Target:  5'- gUCGCGGGcGCUucGU-CCU-GCGCGGCg -3'
miRNA:   3'- -GGCGCUC-CGAcuUAcGGAcCGUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 15767 0.66 0.602577
Target:  5'- gCGCGGccGGCUGc-UGCgUGGuCugGGUg -3'
miRNA:   3'- gGCGCU--CCGACuuACGgACC-GugCCG- -5'
23893 3' -58.2 NC_005262.1 + 12436 0.66 0.602577
Target:  5'- gUCGCGGacGGCgcGGUGCCgagcuGCAUGGCg -3'
miRNA:   3'- -GGCGCU--CCGacUUACGGac---CGUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 20462 0.66 0.595144
Target:  5'- gCCGCGuGGGCUguuccgcagagcggcGAGUGCguaaUcgcgcgcaccaucGGCGCGGCg -3'
miRNA:   3'- -GGCGC-UCCGA---------------CUUACGg---A-------------CCGUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 43833 0.66 0.591963
Target:  5'- gCCGCG-GGCcg---GCC-GcGCGCGGCg -3'
miRNA:   3'- -GGCGCuCCGacuuaCGGaC-CGUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 6293 0.66 0.591963
Target:  5'- gCGCGAcGCUGAAcuucggcGCCUcgucGGC-CGGCu -3'
miRNA:   3'- gGCGCUcCGACUUa------CGGA----CCGuGCCG- -5'
23893 3' -58.2 NC_005262.1 + 62662 0.66 0.590903
Target:  5'- gCGuCGGGGgUGggUuuaguccGCCcGGCGgCGGCa -3'
miRNA:   3'- gGC-GCUCCgACuuA-------CGGaCCGU-GCCG- -5'
23893 3' -58.2 NC_005262.1 + 23396 0.66 0.581381
Target:  5'- aCGCGcGGCUGAAU-CCgcgcgaaCGCGGCa -3'
miRNA:   3'- gGCGCuCCGACUUAcGGacc----GUGCCG- -5'
23893 3' -58.2 NC_005262.1 + 14025 0.66 0.581381
Target:  5'- gCGCGGcagcGGCcGGA-GCCUcgGGCGCGGg -3'
miRNA:   3'- gGCGCU----CCGaCUUaCGGA--CCGUGCCg -5'
23893 3' -58.2 NC_005262.1 + 49841 0.66 0.581381
Target:  5'- gCGCGAauGGCccGGUGCC-GGCgGCGGUa -3'
miRNA:   3'- gGCGCU--CCGacUUACGGaCCG-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.