miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23893 5' -54.8 NC_005262.1 + 54863 0.66 0.782184
Target:  5'- -cGCGCGagggucaaauaaUCGGGCGCUUUcGCCgCGCa -3'
miRNA:   3'- guCGUGC------------AGUCCGUGAAGcUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 52560 0.66 0.779196
Target:  5'- gCAGCGCGaUCGucgcugucgagcucGGCGCggcucUCGAUCUUGCa -3'
miRNA:   3'- -GUCGUGC-AGU--------------CCGUGa----AGCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 58826 0.66 0.772169
Target:  5'- aGGCAUGgcugCugcGGCGCUUCGGCa-CGCa -3'
miRNA:   3'- gUCGUGCa---Gu--CCGUGAAGCUGgaGUG- -5'
23893 5' -54.8 NC_005262.1 + 32795 0.66 0.772169
Target:  5'- gCGGCGCGcCGGccauCGCguucgacgUCGGCCUCAUg -3'
miRNA:   3'- -GUCGUGCaGUCc---GUGa-------AGCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 32650 0.66 0.772169
Target:  5'- -uGCGCGggcgaUCAGGUcugcgaacGCUUCGAgUUCGCg -3'
miRNA:   3'- guCGUGC-----AGUCCG--------UGAAGCUgGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 11832 0.66 0.772169
Target:  5'- aCAGUuucgaGCG-CAGGCGCgcgcgagCGGCCUcCACc -3'
miRNA:   3'- -GUCG-----UGCaGUCCGUGaa-----GCUGGA-GUG- -5'
23893 5' -54.8 NC_005262.1 + 22684 0.66 0.772169
Target:  5'- cCAGUGCG-CAGacGCGCcUCGACCgccUCGCa -3'
miRNA:   3'- -GUCGUGCaGUC--CGUGaAGCUGG---AGUG- -5'
23893 5' -54.8 NC_005262.1 + 41124 0.66 0.76201
Target:  5'- -uGCGCGUCAcGGCGCgcUCgGACgaCACg -3'
miRNA:   3'- guCGUGCAGU-CCGUGa-AG-CUGgaGUG- -5'
23893 5' -54.8 NC_005262.1 + 45085 0.66 0.76201
Target:  5'- -cGCGCG-CAGGaCACgUUGACCgCGCu -3'
miRNA:   3'- guCGUGCaGUCC-GUGaAGCUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 52350 0.66 0.76201
Target:  5'- aGGCACGaugcgCGGGCGCggCGugUcgCGCa -3'
miRNA:   3'- gUCGUGCa----GUCCGUGaaGCugGa-GUG- -5'
23893 5' -54.8 NC_005262.1 + 3437 0.66 0.760987
Target:  5'- uCAGCGCGcUCGGGgaucagcucgaacCGCccgUCGACCUCc- -3'
miRNA:   3'- -GUCGUGC-AGUCC-------------GUGa--AGCUGGAGug -5'
23893 5' -54.8 NC_005262.1 + 10294 0.66 0.759962
Target:  5'- cCGGCcccugcgGCGUCu-GCACUUCGGCCgugccgagccacuUCACg -3'
miRNA:   3'- -GUCG-------UGCAGucCGUGAAGCUGG-------------AGUG- -5'
23893 5' -54.8 NC_005262.1 + 53923 0.66 0.751718
Target:  5'- -cGCGCugaagCAGGCGCagcUCGACCagcUCACg -3'
miRNA:   3'- guCGUGca---GUCCGUGa--AGCUGG---AGUG- -5'
23893 5' -54.8 NC_005262.1 + 40997 0.66 0.751718
Target:  5'- gCGGCGC-UCGcugcugauGGCACcgCGAUCUCGCu -3'
miRNA:   3'- -GUCGUGcAGU--------CCGUGaaGCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 17368 0.66 0.741303
Target:  5'- gCGGCGCGgCGGGCccCUgcgGACCUUGCg -3'
miRNA:   3'- -GUCGUGCaGUCCGu-GAag-CUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 4903 0.66 0.741303
Target:  5'- uCGGCgugACGUCGGGCAgUUUGcUCUCGa -3'
miRNA:   3'- -GUCG---UGCAGUCCGUgAAGCuGGAGUg -5'
23893 5' -54.8 NC_005262.1 + 28414 0.66 0.738157
Target:  5'- gCGGCACGugcucgaggucgaaUCGGGcCGCgcCGugCUCGCc -3'
miRNA:   3'- -GUCGUGC--------------AGUCC-GUGaaGCugGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 35308 0.66 0.730778
Target:  5'- cCGGCGCaaaacGGCGCaUCGGCCaUCACg -3'
miRNA:   3'- -GUCGUGcagu-CCGUGaAGCUGG-AGUG- -5'
23893 5' -54.8 NC_005262.1 + 20500 0.66 0.730778
Target:  5'- -cGCGCG-CAccaucggcgcGGCGCUcgcgaCGACCUCACc -3'
miRNA:   3'- guCGUGCaGU----------CCGUGAa----GCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 49148 0.66 0.730778
Target:  5'- uCGGCACGgugggcgugCAGGcCGCaUCGGCCgcagcggCGCg -3'
miRNA:   3'- -GUCGUGCa--------GUCC-GUGaAGCUGGa------GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.