miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23893 5' -54.8 NC_005262.1 + 49148 0.66 0.730778
Target:  5'- uCGGCACGgugggcgugCAGGcCGCaUCGGCCgcagcggCGCg -3'
miRNA:   3'- -GUCGUGCa--------GUCC-GUGaAGCUGGa------GUG- -5'
23893 5' -54.8 NC_005262.1 + 16328 0.67 0.720155
Target:  5'- uCAGCGCGUCGGuuuuCGCUgCGAgCUCGu -3'
miRNA:   3'- -GUCGUGCAGUCc---GUGAaGCUgGAGUg -5'
23893 5' -54.8 NC_005262.1 + 24887 0.67 0.720155
Target:  5'- cCGGCGCGUgaCAGGCGagcUCGGCCa--- -3'
miRNA:   3'- -GUCGUGCA--GUCCGUga-AGCUGGagug -5'
23893 5' -54.8 NC_005262.1 + 39643 0.67 0.706215
Target:  5'- -cGCGCGUgaAGGCACUcgaguuugucgaguUCGACUUUAUc -3'
miRNA:   3'- guCGUGCAg-UCCGUGA--------------AGCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 19448 0.67 0.698656
Target:  5'- uCAGCGCGUCgacguucuuugcGGGCACca-GACCggugaCGCg -3'
miRNA:   3'- -GUCGUGCAG------------UCCGUGaagCUGGa----GUG- -5'
23893 5' -54.8 NC_005262.1 + 41370 0.67 0.698656
Target:  5'- aCGGCACGaacGGCACggcUGACCUaCGCg -3'
miRNA:   3'- -GUCGUGCaguCCGUGaa-GCUGGA-GUG- -5'
23893 5' -54.8 NC_005262.1 + 33251 0.67 0.687805
Target:  5'- -cGCACGUCGaGCGCUuccugUCGAUC-CGCg -3'
miRNA:   3'- guCGUGCAGUcCGUGA-----AGCUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 2142 0.67 0.687805
Target:  5'- cCAGCGCGccgCGGuacaGCACUUCcuCCUCGCc -3'
miRNA:   3'- -GUCGUGCa--GUC----CGUGAAGcuGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 16958 0.67 0.676899
Target:  5'- cCAGCACGcCGGcGCGCUuuucUCGGCgagCGCg -3'
miRNA:   3'- -GUCGUGCaGUC-CGUGA----AGCUGga-GUG- -5'
23893 5' -54.8 NC_005262.1 + 11916 0.68 0.665952
Target:  5'- uCGGCgGCGUC-GGCucggUCGugCUCGCg -3'
miRNA:   3'- -GUCG-UGCAGuCCGuga-AGCugGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 26574 0.68 0.654972
Target:  5'- cCAGUucGCG-CAGGCAUacgcuggCGGCCUCAUc -3'
miRNA:   3'- -GUCG--UGCaGUCCGUGaa-----GCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 8880 0.68 0.643972
Target:  5'- cCGGCAgCGUCAGGUGCgagccgUCGAaCUgGCg -3'
miRNA:   3'- -GUCGU-GCAGUCCGUGa-----AGCUgGAgUG- -5'
23893 5' -54.8 NC_005262.1 + 12396 0.68 0.643972
Target:  5'- gAGCACGcggugcacacggUCAGGCGCggccUUGGCCggcgUCGCg -3'
miRNA:   3'- gUCGUGC------------AGUCCGUGa---AGCUGG----AGUG- -5'
23893 5' -54.8 NC_005262.1 + 35367 0.68 0.632961
Target:  5'- gAGCACGgCGcGGCccgaUUCGACCUCGa -3'
miRNA:   3'- gUCGUGCaGU-CCGug--AAGCUGGAGUg -5'
23893 5' -54.8 NC_005262.1 + 6979 0.68 0.629657
Target:  5'- -uGCGCGuacUCAGGCGCUccagccgcucgacgUCGGCCUuCAg -3'
miRNA:   3'- guCGUGC---AGUCCGUGA--------------AGCUGGA-GUg -5'
23893 5' -54.8 NC_005262.1 + 15696 0.68 0.629657
Target:  5'- gCGGCGCGUCAcaucaucgcgcgucGGCGCcgggCGGCUcgUCGCg -3'
miRNA:   3'- -GUCGUGCAGU--------------CCGUGaa--GCUGG--AGUG- -5'
23893 5' -54.8 NC_005262.1 + 15313 0.68 0.626353
Target:  5'- -cGCAUGggCGGGCggccgucgagcaacaGCUUCGACCagUCGCa -3'
miRNA:   3'- guCGUGCa-GUCCG---------------UGAAGCUGG--AGUG- -5'
23893 5' -54.8 NC_005262.1 + 37248 0.68 0.621949
Target:  5'- gCAGCGCGUCGGcCGCUUCGGagUgGCc -3'
miRNA:   3'- -GUCGUGCAGUCcGUGAAGCUggAgUG- -5'
23893 5' -54.8 NC_005262.1 + 23688 0.68 0.621949
Target:  5'- gCGGCGCGUguGGguCUaccggcgcacggUCGACCaCGCg -3'
miRNA:   3'- -GUCGUGCAguCCguGA------------AGCUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 13736 0.68 0.610946
Target:  5'- uGGCACGccgugcCAGGCAU-UCaGCCUCGCg -3'
miRNA:   3'- gUCGUGCa-----GUCCGUGaAGcUGGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.