miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23893 5' -54.8 NC_005262.1 + 39643 0.67 0.706215
Target:  5'- -cGCGCGUgaAGGCACUcgaguuugucgaguUCGACUUUAUc -3'
miRNA:   3'- guCGUGCAg-UCCGUGA--------------AGCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 5176 0.69 0.589004
Target:  5'- aCGGCcgGCGUCgcGGGCGCgggcgCGGCCggCGCg -3'
miRNA:   3'- -GUCG--UGCAG--UCCGUGaa---GCUGGa-GUG- -5'
23893 5' -54.8 NC_005262.1 + 6577 0.69 0.598864
Target:  5'- gCGGCGCGaUCAGGCuccauuccagaucagCGACCUCGa -3'
miRNA:   3'- -GUCGUGC-AGUCCGugaa-----------GCUGGAGUg -5'
23893 5' -54.8 NC_005262.1 + 13736 0.68 0.610946
Target:  5'- uGGCACGccgugcCAGGCAU-UCaGCCUCGCg -3'
miRNA:   3'- gUCGUGCa-----GUCCGUGaAGcUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 23688 0.68 0.621949
Target:  5'- gCGGCGCGUguGGguCUaccggcgcacggUCGACCaCGCg -3'
miRNA:   3'- -GUCGUGCAguCCguGA------------AGCUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 15313 0.68 0.626353
Target:  5'- -cGCAUGggCGGGCggccgucgagcaacaGCUUCGACCagUCGCa -3'
miRNA:   3'- guCGUGCa-GUCCG---------------UGAAGCUGG--AGUG- -5'
23893 5' -54.8 NC_005262.1 + 26574 0.68 0.654972
Target:  5'- cCAGUucGCG-CAGGCAUacgcuggCGGCCUCAUc -3'
miRNA:   3'- -GUCG--UGCaGUCCGUGaa-----GCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 33251 0.67 0.687805
Target:  5'- -cGCACGUCGaGCGCUuccugUCGAUC-CGCg -3'
miRNA:   3'- guCGUGCAGUcCGUGA-----AGCUGGaGUG- -5'
23893 5' -54.8 NC_005262.1 + 41370 0.67 0.698656
Target:  5'- aCGGCACGaacGGCACggcUGACCUaCGCg -3'
miRNA:   3'- -GUCGUGCaguCCGUGaa-GCUGGA-GUG- -5'
23893 5' -54.8 NC_005262.1 + 35637 0.69 0.582446
Target:  5'- aCGGCACGcggCGGGCgauggGCUacucggugccgcagcUCGugCUCACg -3'
miRNA:   3'- -GUCGUGCa--GUCCG-----UGA---------------AGCugGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 12808 0.7 0.535991
Target:  5'- gCGGCGCG-CAgccGGCGCgugaagaaggagcgCGGCCUCGCg -3'
miRNA:   3'- -GUCGUGCaGU---CCGUGaa------------GCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 36532 0.7 0.502274
Target:  5'- uCGGCGCGgcgacugggauuaUCGGGCGCa-CGAuCCUCGCg -3'
miRNA:   3'- -GUCGUGC-------------AGUCCGUGaaGCU-GGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 12037 0.75 0.296374
Target:  5'- -cGCGCGUCcccGGCAUggcaGACCUCACg -3'
miRNA:   3'- guCGUGCAGu--CCGUGaag-CUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 7537 0.73 0.36022
Target:  5'- gCGGCGCGUCGGcGCGCU-CGACgaCAUc -3'
miRNA:   3'- -GUCGUGCAGUC-CGUGAaGCUGgaGUG- -5'
23893 5' -54.8 NC_005262.1 + 1739 0.73 0.368845
Target:  5'- uCAGUGCGagGGGCGCgggaUUCGAgCUCGCg -3'
miRNA:   3'- -GUCGUGCagUCCGUG----AAGCUgGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 61182 0.72 0.404734
Target:  5'- gGGCGCG-C-GGCGCUacgagaaCGACCUCACg -3'
miRNA:   3'- gUCGUGCaGuCCGUGAa------GCUGGAGUG- -5'
23893 5' -54.8 NC_005262.1 + 42863 0.72 0.414045
Target:  5'- -cGCGCG-CGGGCucgUCGACCUCGg -3'
miRNA:   3'- guCGUGCaGUCCGugaAGCUGGAGUg -5'
23893 5' -54.8 NC_005262.1 + 14212 0.71 0.442749
Target:  5'- gCGGCACugacggCGGGCGCgaugUCGACCacgCACg -3'
miRNA:   3'- -GUCGUGca----GUCCGUGa---AGCUGGa--GUG- -5'
23893 5' -54.8 NC_005262.1 + 42476 0.71 0.442749
Target:  5'- gAGCcUGUCGGGCACU--GACCUCuACu -3'
miRNA:   3'- gUCGuGCAGUCCGUGAagCUGGAG-UG- -5'
23893 5' -54.8 NC_005262.1 + 49610 0.71 0.481677
Target:  5'- uCGGCcgcgACGUCgcuaaccAGGCGCUcggUGGCCUCGCg -3'
miRNA:   3'- -GUCG----UGCAG-------UCCGUGAa--GCUGGAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.