miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23894 3' -50.8 NC_005262.1 + 18933 0.66 0.936998
Target:  5'- uGUAGCGCUgGCGGUccUCGCGg---GCCc -3'
miRNA:   3'- -CGUUGCGA-UGUCA--AGCGCgaaaCGGu -5'
23894 3' -50.8 NC_005262.1 + 27062 0.66 0.936998
Target:  5'- --cGCGCUACGcGUUCGUGCgcgaGCUc -3'
miRNA:   3'- cguUGCGAUGU-CAAGCGCGaaa-CGGu -5'
23894 3' -50.8 NC_005262.1 + 17775 0.66 0.931483
Target:  5'- aGUAGCGCgGCAGcgCGaCGCcUUGCg- -3'
miRNA:   3'- -CGUUGCGaUGUCaaGC-GCGaAACGgu -5'
23894 3' -50.8 NC_005262.1 + 43242 0.66 0.931483
Target:  5'- uGUGGCGCUcgaaGCAGUacgUCGUGCagaaGCCGa -3'
miRNA:   3'- -CGUUGCGA----UGUCA---AGCGCGaaa-CGGU- -5'
23894 3' -50.8 NC_005262.1 + 10915 0.66 0.925674
Target:  5'- uGUAguGCGCgUACugcGUcgUGCGCUUUGCCu -3'
miRNA:   3'- -CGU--UGCG-AUGu--CAa-GCGCGAAACGGu -5'
23894 3' -50.8 NC_005262.1 + 26292 0.66 0.925674
Target:  5'- cGCGACGgUGCcGUaUGCGCUcUGCgAa -3'
miRNA:   3'- -CGUUGCgAUGuCAaGCGCGAaACGgU- -5'
23894 3' -50.8 NC_005262.1 + 46034 0.66 0.925674
Target:  5'- uGCcGCGCUACuacgaAGUcaugCGCGCgucGCCGg -3'
miRNA:   3'- -CGuUGCGAUG-----UCAa---GCGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 18524 0.66 0.925077
Target:  5'- --cGCGCggaAGUUCGCGUUcgacgcuccgaggUUGCCGg -3'
miRNA:   3'- cguUGCGaugUCAAGCGCGA-------------AACGGU- -5'
23894 3' -50.8 NC_005262.1 + 5566 0.66 0.925077
Target:  5'- gGUAACGCUGCccaAGUUCGUgguacggGCggcGCCGc -3'
miRNA:   3'- -CGUUGCGAUG---UCAAGCG-------CGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 2910 0.66 0.919573
Target:  5'- cGguGCGC-ACGGccgacuucaUCGCGCUUUcGCCGc -3'
miRNA:   3'- -CguUGCGaUGUCa--------AGCGCGAAA-CGGU- -5'
23894 3' -50.8 NC_005262.1 + 54775 0.66 0.919573
Target:  5'- uGC-ACGUUACgGGUUCGUGCguccGCCc -3'
miRNA:   3'- -CGuUGCGAUG-UCAAGCGCGaaa-CGGu -5'
23894 3' -50.8 NC_005262.1 + 643 0.66 0.919573
Target:  5'- aGCAGCGCUuguuCGGUUUGcCGUUgacgagggUGCUg -3'
miRNA:   3'- -CGUUGCGAu---GUCAAGC-GCGAa-------ACGGu -5'
23894 3' -50.8 NC_005262.1 + 32652 0.66 0.919573
Target:  5'- --uACGC-GCAGUUCGaUGUUgagUGCCAa -3'
miRNA:   3'- cguUGCGaUGUCAAGC-GCGAa--ACGGU- -5'
23894 3' -50.8 NC_005262.1 + 16042 0.66 0.913178
Target:  5'- cGCGAUGCcg-GGUUCGCcGCg--GCCGg -3'
miRNA:   3'- -CGUUGCGaugUCAAGCG-CGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 4911 0.66 0.913178
Target:  5'- cGCAGCGCggcaGCAGccaaCGCGCggagcugcGCCGg -3'
miRNA:   3'- -CGUUGCGa---UGUCaa--GCGCGaaa-----CGGU- -5'
23894 3' -50.8 NC_005262.1 + 10951 0.67 0.899519
Target:  5'- cGCuACGCgcaGCAGgcauUCGCGCUgucggcgcGCCGg -3'
miRNA:   3'- -CGuUGCGa--UGUCa---AGCGCGAaa------CGGU- -5'
23894 3' -50.8 NC_005262.1 + 28165 0.67 0.899519
Target:  5'- cGCGGCGCaACug--CGCGCggcgGCCGu -3'
miRNA:   3'- -CGUUGCGaUGucaaGCGCGaaa-CGGU- -5'
23894 3' -50.8 NC_005262.1 + 46190 0.67 0.876908
Target:  5'- uGCuGGCGCUcCAGcuccgCGCGCUgcGCCGc -3'
miRNA:   3'- -CG-UUGCGAuGUCaa---GCGCGAaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 10302 0.67 0.876908
Target:  5'- uGCGGCGuCUGCAcUUCG-GCcgUGCCGa -3'
miRNA:   3'- -CGUUGC-GAUGUcAAGCgCGaaACGGU- -5'
23894 3' -50.8 NC_005262.1 + 26556 0.68 0.868827
Target:  5'- aGCGgccgacGCGCUGCgccAGUUCGCGCag-GCa- -3'
miRNA:   3'- -CGU------UGCGAUG---UCAAGCGCGaaaCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.