miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23894 3' -50.8 NC_005262.1 + 26556 0.68 0.868827
Target:  5'- aGCGgccgacGCGCUGCgccAGUUCGCGCag-GCa- -3'
miRNA:   3'- -CGU------UGCGAUG---UCAAGCGCGaaaCGgu -5'
23894 3' -50.8 NC_005262.1 + 20055 0.68 0.863853
Target:  5'- uCGACGCUuacuucgaagcguggAUGGUgaugUCGCGCUggUUGCCGc -3'
miRNA:   3'- cGUUGCGA---------------UGUCA----AGCGCGA--AACGGU- -5'
23894 3' -50.8 NC_005262.1 + 49544 0.68 0.860485
Target:  5'- cGCAgagcGCGCUccaGCAGgUCGCGCagaacgagGCCGu -3'
miRNA:   3'- -CGU----UGCGA---UGUCaAGCGCGaaa-----CGGU- -5'
23894 3' -50.8 NC_005262.1 + 49231 0.68 0.85189
Target:  5'- gGCGGCGC-GCAGUccgCGCGCgagGuCCGc -3'
miRNA:   3'- -CGUUGCGaUGUCAa--GCGCGaaaC-GGU- -5'
23894 3' -50.8 NC_005262.1 + 60328 0.68 0.84305
Target:  5'- -gGACGcCUACGGcgCGCGCg--GCUAc -3'
miRNA:   3'- cgUUGC-GAUGUCaaGCGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 49553 0.69 0.809352
Target:  5'- gGCGACGCUGCguccugcucgugcguGGUcgacaUCGCGCcc-GCCGu -3'
miRNA:   3'- -CGUUGCGAUG---------------UCA-----AGCGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 10437 0.69 0.795529
Target:  5'- cGCAugGCgccgaucaGGUUCGCGCg--GUCGg -3'
miRNA:   3'- -CGUugCGaug-----UCAAGCGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 50942 0.69 0.791512
Target:  5'- gGCAGCGCgaagcucggcacgACGGUUCcCGCgagGCCGc -3'
miRNA:   3'- -CGUUGCGa------------UGUCAAGcGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 11648 0.69 0.785436
Target:  5'- gGCGGCGCcgGCG--UCGCGCUgcacgcugGCCGg -3'
miRNA:   3'- -CGUUGCGa-UGUcaAGCGCGAaa------CGGU- -5'
23894 3' -50.8 NC_005262.1 + 50329 0.7 0.764754
Target:  5'- cGCGACGCgcGCGGgcuUCGCGCccUUGCg- -3'
miRNA:   3'- -CGUUGCGa-UGUCa--AGCGCGa-AACGgu -5'
23894 3' -50.8 NC_005262.1 + 1134 0.7 0.758432
Target:  5'- uGCGGcCGCUGCGGgcuucgaugcugcCGCGCgggcUUGCCAu -3'
miRNA:   3'- -CGUU-GCGAUGUCaa-----------GCGCGa---AACGGU- -5'
23894 3' -50.8 NC_005262.1 + 31496 0.71 0.721756
Target:  5'- cGCAcGCGCUGCcucgacGUUCGCGCccgcGCCGu -3'
miRNA:   3'- -CGU-UGCGAUGu-----CAAGCGCGaaa-CGGU- -5'
23894 3' -50.8 NC_005262.1 + 24467 0.71 0.710739
Target:  5'- -uGGCGCUGCAcGgcacgagcgUCGCGCU-UGCCGc -3'
miRNA:   3'- cgUUGCGAUGU-Ca--------AGCGCGAaACGGU- -5'
23894 3' -50.8 NC_005262.1 + 29887 0.71 0.69964
Target:  5'- cGCGGCGCUucaggaagaugACGGUUCGgGCgaUGCg- -3'
miRNA:   3'- -CGUUGCGA-----------UGUCAAGCgCGaaACGgu -5'
23894 3' -50.8 NC_005262.1 + 14413 0.71 0.688472
Target:  5'- uGCGACGCccGCGGUgaugaacgCGCGCgucGCCGa -3'
miRNA:   3'- -CGUUGCGa-UGUCAa-------GCGCGaaaCGGU- -5'
23894 3' -50.8 NC_005262.1 + 34867 0.71 0.688472
Target:  5'- gGCGACGCUGCccuGUUCcUGCcgUGCCu -3'
miRNA:   3'- -CGUUGCGAUGu--CAAGcGCGaaACGGu -5'
23894 3' -50.8 NC_005262.1 + 52749 0.72 0.665975
Target:  5'- gGCGACGCUGCGGccuguugcugCGCGCggucUUGCgCGa -3'
miRNA:   3'- -CGUUGCGAUGUCaa--------GCGCGa---AACG-GU- -5'
23894 3' -50.8 NC_005262.1 + 53847 0.73 0.598033
Target:  5'- cGCGGCGCggacggcaaGCAGaUCGCGCUcaaGCCGg -3'
miRNA:   3'- -CGUUGCGa--------UGUCaAGCGCGAaa-CGGU- -5'
23894 3' -50.8 NC_005262.1 + 854 0.75 0.47759
Target:  5'- aGCGACGCgcGCAaaUCGCGCUcguccuUUGCCAu -3'
miRNA:   3'- -CGUUGCGa-UGUcaAGCGCGA------AACGGU- -5'
23894 3' -50.8 NC_005262.1 + 32668 0.76 0.436723
Target:  5'- uGCgAACGCUucgAGUUCGCGCUgccgGCCGc -3'
miRNA:   3'- -CG-UUGCGAug-UCAAGCGCGAaa--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.